Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02617 ATGCAAAAGAAAAAAATGAGTGGGAAGAGTTGGTTGAGTGGCATGCAAGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAAGGAGTCTACGACACCTCTGTCATCTTCTTCGACGGCGCCGTTGCCCAAATCAGTAACCACCTCAACTCCGTCGACGACCCTTTGGTGAGAGCCAAATGGATGAACGTTAAGAAAGCGGTGTACGATGAAACCCAAGTGGTGAAACAACTAGACGCGGAGAGAAGGGCGTTTAAGGAAACTCGATCACGATCACCGTCGGAGGAGTATCCCATTCCCAGTACCTCTCCTTGCACTTCCTTCGTCCACGAACATGATCCCGACGTCTGGAGCCCGCCCAGTGGAGAGCCCAGGCTCACTGCTCGAAGGGACGGGGCTTGGAGCCGAGGCTCTACCAGGCCCGCCACTCGTGCCGTAAAGCCCAGCAGGGTTGGCTCTGGGGCCCGACCACCGACGAATGGAAAGAACGCCGGTGGCGGTGCTTCTGGAAAGGGGACCAGGACAGGTGGTTGTTCACGTTCAGTTAATGGAGATGGGAAGAAGTCAAAGAAGTATGAGTATGAGGGTCCTGATCCTGAGTTGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGATGATGTTGCAGGCCTCACTCAAGCAAAAAGCCTTCTAGAAGAAGCCCTTCTGCTTCCCTTGTGGATGCCTCAATATTTCCAGGGAATAAGGAGACCATGGAAAGGTGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAAACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTCAACGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTTCGATGCTTGTTTGATCTCGCTAGAGCACATGCACCCAGTACCATTTTCATTGATGAGATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCCGAACTTCTAGTTCAGGTTGATGGTGTGAACAATAGTTCCACAAATGAAGATGGAACCCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGACTCGTAAAGAGCTGATCCGTATCAATCTGAGGACTGTAGAGGTGTCCCCTGATGTGAACATAGATGAAGTGGCCAAAGGTACAGAAGGGTACAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCTCTGAATGGTATGAGACGCAAGATAGCAGGAAAGACGCGTGATGAGATCAAGAGGATGTCCAAGGATGAGATTTCCAAAGACCCTGTTGCAATGTGTGATTTTAAAGAAGCTTTGAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCACCAAAAGTGGTTTGCCGAATTTGGATCAGCCTAA 1512 0.494 MQKKKMSGKSWLSGMQEHLKLAREYAAEGVYDTSVIFFDGAVAQISNHLNSVDDPLVRAKWMNVKKAVYDETQVVKQLDAERRAFKETRSRSPSEEYPIPSTSPCTSFVHEHDPDVWSPPSGEPRLTARRDGAWSRGSTRPATRAVKPSRVGSGARPPTNGKNAGGGASGKGTRTGGCSRSVNGDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKSLLEEALLLPLWMPQYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLETRKELIRINLRTVEVSPDVNIDEVAKGTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKRMSKDEISKDPVAMCDFKEALKKVQPSVSQADIERHQKWFAEFGSA* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02617 503 Pfam AAA+ lid domain 414 455 IPR041569 -
Phac5g02617 503 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 13 503 IPR028596 GO:0008017|GO:0008568|GO:0051013
Phac5g02617 503 FunFam Katanin p60 ATPase-containing subunit A1 393 479 - -
Phac5g02617 503 FunFam Katanin p60 ATPase-containing subunit A1 10 86 - -
Phac5g02617 503 Gene3D - 213 493 IPR027417 -
Phac5g02617 503 MobiDBLite consensus disorder prediction 94 108 - -
Phac5g02617 503 Pfam Vps4 C terminal oligomerisation domain 457 501 IPR015415 -
Phac5g02617 503 Gene3D - 10 86 - -
Phac5g02617 503 SMART AAA_5 251 394 IPR003593 GO:0016887
Phac5g02617 503 MobiDBLite consensus disorder prediction 184 198 - -
Phac5g02617 503 CDD Kp60-NTD 13 81 - -
Phac5g02617 503 FunFam Katanin p60 ATPase-containing subunit A1 213 404 - -
Phac5g02617 503 Pfam ATPase family associated with various cellular activities (AAA) 255 392 IPR003959 GO:0005524|GO:0016887
Phac5g02617 503 Gene3D - 393 479 - -
Phac5g02617 503 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Phac5g02617 503 PANTHER AAA DOMAIN-CONTAINING 31 502 - -
Phac5g02617 503 MobiDBLite consensus disorder prediction 85 198 - -
Phac5g02617 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 489 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02617 Phac-Chr5 43582116 43585461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02617 207 482 Calmodulin-binding Proteins AT3G56690 41.135 2.37e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02617 K07767 - gmx:100801219 744.191