Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02610 ATGTGGTCGCAGTCACAGAGTAGCATCCACTCGTCGGAATCTGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACGCTGGGTCTTCCCGGTACCAAAACCGCCGCCAAACGTTCCTTCTCAGACACCGTTGAAGATCTTGCAACTTCGTTAGATAAATCCAAATTCCCCACTTCCAAGGAACAGGTGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGGAAGAATGCGCTGAAGAGTTGGAAGTTGGTGAAGGTGGCTGTGGACGGAGCTCCTTATCTGAGAAAAGTGGATCTTGAAATGTACGAGAGTTATGAAGATTTGATGAGGGAATTAGAGAGCATGTTTTGTGGTTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTCATGGAGTCTGTAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCTATTGTTCTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG 579 0.4732 MWSQSQSSIHSSESDAVDCNLKETELTLGLPGTKTAAKRSFSDTVEDLATSLDKSKFPTSKEQVVGWPPVRASRKNALKSWKLVKVAVDGAPYLRKVDLEMYESYEDLMRELESMFCGLAIRNHLMNERKLMESVNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAIVLGPRSSSKCSGST* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02610 192 ProSiteProfiles PB1 domain profile. 81 176 IPR000270 GO:0005515
Phac5g02610 192 FunFam Auxin-responsive protein 76 184 - -
Phac5g02610 192 Pfam AUX/IAA family 80 183 IPR033389 -
Phac5g02610 192 Gene3D - 76 186 - -
Phac5g02610 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 178 IPR003311 GO:0005634|GO:0006355
Phac5g02610 192 SUPERFAMILY CAD & PB1 domains 74 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02610 Phac-Chr5 43562745 43564485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02610 84 184 B3 DNA Binding Superfamily AT1G59750 32.673 3.83e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Phac5g02610 AUX_IAA 7.2e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02610 K14484 - gmx:100500488 301.212