Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02608 ATGGATGTTACTTCTCTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTTTGCTGATGGAGCAACTGGAAAATCGTAATGGTCGTCAGCACATAATTGACATTACTGTGAATGGTGAAGCTCTAACCATGTCTTCTCATAATGATCAACACTCTGAAATGCATTTACCGCAGAATGGAGATCATCCATCTGGGGACACACAAGATTCCACTCATCAAGCATCTTCATCTTCTGCATCAAGATTAAACTCTAGAAATTCAGCTTCATTAAGAAGAGGTGAAGGATATGGTCAGCGTGGACGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTGGTTCTGTCACTGTCCAGGAATGAAAATCCTCAAGCTCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACAGTCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACCTATACTGCCATCTACGTTTCTCATGTCTCAGACGAGGAGAACGGTCATGCTACACAATCAGCCACAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTTGGAAATGTTTGGATCTTTGGGGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAATTGTGGTGATCAGGATGTCAATGCAGCTATAGATGAAGGTGGAGTTTTGGCTGCAGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTAGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACTGAAGTTGGTACAAGTAATGGAGAGTCACCTTCAGCCTGGGATTCCAGTACTCATTAG 1278 0.4092 MDVTSLGSNSNTQTDQHPLLMEQLENRNGRQHIIDITVNGEALTMSSHNDQHSEMHLPQNGDHPSGDTQDSTHQASSSSASRLNSRNSASLRRGEGYGQRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSNEQDSSQQSQGSSGSNPPDRTYTAIYVSHVSDEENGHATQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENCGDQDVNAAIDEGGVLAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTSNGESPSAWDSSTH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02608 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Phac5g02608 425 FunFam E3 ubiquitin-protein ligase 348 415 - -
Phac5g02608 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Phac5g02608 425 SMART ring_2 365 405 IPR001841 -
Phac5g02608 425 SUPERFAMILY RING/U-box 357 412 - -
Phac5g02608 425 Pfam Ring finger domain 365 406 IPR001841 -
Phac5g02608 425 MobiDBLite consensus disorder prediction 51 101 - -
Phac5g02608 425 MobiDBLite consensus disorder prediction 169 188 - -
Phac5g02608 425 MobiDBLite consensus disorder prediction 62 92 - -
Phac5g02608 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 414 IPR013083 -
Phac5g02608 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02608 Phac-Chr5 43530700 43535172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02608 1 416 C3H Transcription Factor Family AT1G80400 58.531 4.06e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02608 - - gmx:100819729 741.495