Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02552 ATGTCTAGAGCATTGGAACAGGACTACATAGGGTTGGCAGAGAAACCGTCAATGGACGGAGCCTCTGACAAACTATCTTCTTCTTCTTCTTCTTCATCATCATCATCTTCTGTGGATGCTAAAACCTCACCACTGAACTTGAAGGAGACAGAGCTGAGGCTTGGTCTCCCTGGTTGCAAGTCTCCAGAGAGAAAATCTGGTGCTGGACTCTGTCTTTTTGGCAAAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTTGCAAGCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGACGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCCAGAGGGGGCATTGTTGGGAAGCTTCTTATTGGTTTAGACGCTCAAACTAATAACACCTCCATCAAAGAGGTTGGTGCAGTTCCTCAATCTGACAAACCGGTTCAGGAAAAGAATGACCAGGTTGCTGCAACAAATGGTCATGCCACTGCTCCTGATGCCAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAATGATGAAGGCGAGGGAAAACCTGGTTTTGGTTGTCTTTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTTAGAAAGATTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATAGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGGTTGTAAAGCTATTCTCTGGGATGAATTCCTGCATATTATGGACACAACTGATTGA 1026 0.4464 MSRALEQDYIGLAEKPSMDGASDKLSSSSSSSSSSSSVDAKTSPLNLKETELRLGLPGCKSPERKSGAGLCLFGKELQNKHNVCSVASPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGAALFSPRGGIVGKLLIGLDAQTNNTSIKEVGAVPQSDKPVQEKNDQVAATNGHATAPDAKAQVVGWPPIRSFRKNTMASNLAKNNDEGEGKPGFGCLYVKVSMDGAPYLRKIDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLGCKAILWDEFLHIMDTTD* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02552 341 ProSiteProfiles PB1 domain profile. 215 317 IPR000270 GO:0005515
Phac5g02552 341 FunFam Auxin-responsive protein 210 327 - -
Phac5g02552 341 Gene3D - 212 329 - -
Phac5g02552 341 SUPERFAMILY CAD & PB1 domains 215 316 - -
Phac5g02552 341 MobiDBLite consensus disorder prediction 21 44 - -
Phac5g02552 341 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 322 IPR003311 GO:0005634|GO:0006355
Phac5g02552 341 Pfam AUX/IAA family 49 324 IPR033389 -
Phac5g02552 341 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02552 Phac-Chr5 43277057 43280271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02552 217 320 B3 DNA Binding Superfamily AT1G19850 34.906 1.08e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac5g02552 AUX_IAA 3.2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02552 K14484 - gmx:100804423 532.332