LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g02547	ATGATGACTGGGTTTCCTAACTGGTGGAGCATGCATCCACCACCCCAATATGTGCTTCCACCTTCTTCAATTTCTTTTAATTTTTTGTCTGAAAATCCAGAGCCTCCTCACTCATGGACCCAACTACTTTCTGGATTACCAGGAGAAGAAGAGAATCTTTGCTTCATTGATTTTCAGCCGAAAAAGTTGGGAAACTGGGATGTTCAAATTCTTAACACTGCTTCCGGAGTTTCTAATAATTTTGATGCATTAAAGCAAGAAAATTGTGAAAGGGGCAATTTGTACGAACATGGGCGTGAAGAATTTCAGGCTTCTGATCCCGCTGATTCATCTTGGTCACATATGGTGCCTGTTTCTTCTCCCGGGTCTTCTTGTGTCTCTAGCATCAGTGGTAACAATATATTGGATTTCACCTATAACAACTCAGAACATAGAAAAAATCTCTTACAAAACCAAACATCCGAGTGCAATAGCACAGGCAGAGTTGGAGTTTGCAAGAAAGCTAGGGTTCAGTCATGTTCAAGTCAAGCACCTCTGAAGGTGCGGAAGGAGAAGCTAAGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGTGATGTTTCTGGCAATTTTTTTTCCACTGATGTTATTTATACGTTTGTAA	723	0.4094	MMTGFPNWWSMHPPPQYVLPPSSISFNFLSENPEPPHSWTQLLSGLPGEEENLCFIDFQPKKLGNWDVQILNTASGVSNNFDALKQENCERGNLYEHGREEFQASDPADSSWSHMVPVSSPGSSCVSSISGNNILDFTYNNSEHRKNLLQNQTSECNSTGRVGVCKKARVQSCSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEVMFLAIFFPLMLFIRL*	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g02547	240	CDD	bHLH_AtbHLH_like	180	226	IPR045239	-
	Phac5g02547	240	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	170	219	IPR011598	GO:0046983
	Phac5g02547	240	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	58	226	-	-
	Phac5g02547	240	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	180	228	IPR036638	GO:0046983
	Phac5g02547	240	Gene3D	-	180	227	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g02547	Phac-Chr5	43261148	43264867	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g02547	28	231	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G29100	37.500	4.83e-27	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g02547	-		-	vun:114183597	342.043