Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02540 ATGGGCGCTGACATGTCCAACAATCCACCTCCCTCTTCTCATGCCAAAGACTTCTTTGCCTCCCCTGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCACCGCGCTGGCGTGGCGGCGGAGGCCGAAGCTGCCACTTCCAACATGGAGGTGGAGGAGTGGGAAGAAGGGAGCGGAGGAGGTGAAAGGCTAGAAGAGATTAGCAGCGAGAATTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAGCACGAGGATGGTGATGCTGATGCTGACGTGGACAGGAAGAGGAAGAAGAAGAGGAAGAAATATCACAGACACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTTAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTAAAGTTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTGAAGGAGAAAAATAAGACCTTACGAGAGACAATAAACAAAGCTTGTTGCCCCACCTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCTGGGTCAACGTCCCCTTCGTGTTCTTCTGGCCATGACCAAGAGAACAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATTGACAATTCAAGGATAATGGATATAGTGAACCAAGCAATGGAGGAACTGATTAAGATGGCTACCATGGGGGAACCATTATGGCTTCGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATATGTGAAGGAGTTTGCTGTTGAAAACTCATGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTCGTGGATCTCCCTCGACTTGTCCAAAGTTTTCTAGATGCGAATCAATGGAAAGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTCCAAATGCTTACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGGTGAACAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCACTCTATGTATCGCACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAAGCACTGGATTACGACTCTACAACTTCAATGTGAACGTCTAGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGCTTCTGCCATGCAATTGGCGCGTCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAATGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCTGTTTCATCTGTATGGTTGCCAGTTTCACAAAATGTTCTGTTTGATTTCTTGAGGGATGAAACACGCCGAATGGGATATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCCGTTACCATTCAAACAATTAA 1899 0.4576 MGADMSNNPPPSSHAKDFFASPALSLSLAGIFHRAGVAAEAEAATSNMEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDGDADADVDRKRKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPTCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYVKEFAVENSCSGKPKRSIEASRDTGVVFVDLPRLVQSFLDANQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSGEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGAKHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSQNVLFDFLRDETRRMGYHVKWWDSAVHCKFIQRTRPRQCRYHSNN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02540 632 FunFam Homeobox-leucine zipper protein GLABRA 2 273 496 - -
Phac5g02540 632 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 103 606 IPR042160 -
Phac5g02540 632 CDD START_ArGLABRA2_like 269 496 - -
Phac5g02540 632 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Phac5g02540 632 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Phac5g02540 632 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Phac5g02540 632 Gene3D - 92 175 - -
Phac5g02540 632 Pfam START domain 275 497 IPR002913 GO:0008289
Phac5g02540 632 MobiDBLite consensus disorder prediction 39 115 - -
Phac5g02540 632 ProSiteProfiles START domain profile. 264 500 IPR002913 GO:0008289
Phac5g02540 632 SMART START_1 273 497 IPR002913 GO:0008289
Phac5g02540 632 Coils Coil 212 232 - -
Phac5g02540 632 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Phac5g02540 632 SUPERFAMILY Bet v1-like 267 497 - -
Phac5g02540 632 SMART HOX_1 104 166 IPR001356 GO:0003677
Phac5g02540 632 Coils Coil 161 191 - -
Phac5g02540 632 SUPERFAMILY Bet v1-like 519 624 - -
Phac5g02540 632 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Phac5g02540 632 CDD homeodomain 109 160 IPR001356 GO:0003677
Phac5g02540 632 Gene3D - 321 494 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02540 Phac-Chr5 43205669 43211305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02540 66 619 Homeobox Transcription Factor Family AT1G79840 64.184 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac5g02540 START 1.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02540 K09338 - gmx:100809926 1038.1