Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02487 ATGGATGAAAGGTCAAGAAACGAAGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGAGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCACCTGGTGAGGACTGGTCTCTCATTGGTAAAATGAAGAACGGCAACACAGAAAGAGAAGAGTCTCTTCTCTCTCTTGGCTGCTTACCTTCTTCGAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACCAGGGTAACAACAAAGCCTCTTCACCGTTCCTTCAGTTCCCATCAACCCCACCTGTGATGGGAAAAGATGCTTCACAAAACTGTTGTCCGAAGGTGGCAGAGTTGCATAATGGTTGTGGTGGGGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCGCTTCTAAGCCACCGACTGAGTCACAGCCTGAGCAGCATAACAAGGTGGCTGGTAAAAAACCTGTTGATAACTATGGTGGGAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTAACAACAAGCAGGATGAAGAGAAAGCAATCACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTAAGAGTGTTGAAGAGTTCAGAGCTTTCTGCCTTTACCCTAGGCAGTAAGCAAGAGAAGATATCTCTTGACTCGGCAATGAAATGA 1032 0.4709 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLIGKMKNGNTEREESLLSLGCLPSSNMSHAILSPNNGFQSKASPWPNYHNQGNNKASSPFLQFPSTPPVMGKDASQNCCPKVAELHNGCGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPTESQPEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKISLDSAMK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02487 343 MobiDBLite consensus disorder prediction 149 167 - -
Phac5g02487 343 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Phac5g02487 343 MobiDBLite consensus disorder prediction 149 210 - -
Phac5g02487 343 MobiDBLite consensus disorder prediction 181 200 - -
Phac5g02487 343 MobiDBLite consensus disorder prediction 22 43 - -
Phac5g02487 343 FunFam Auxin-responsive protein 213 333 - -
Phac5g02487 343 Pfam AUX/IAA family 38 326 IPR033389 -
Phac5g02487 343 SUPERFAMILY CAD & PB1 domains 211 318 - -
Phac5g02487 343 MobiDBLite consensus disorder prediction 1 51 - -
Phac5g02487 343 Gene3D - 213 332 - -
Phac5g02487 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02487 Phac-Chr5 42961257 42965542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02487 221 332 B3 DNA Binding Superfamily AT4G23980 33.929 9.87e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac5g02487 AUX_IAA 9.1e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02487 K14484 - gmx:100804593 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01920 10 41545692 41548999 Phac5g02487 5 42961257 42965542 ECH
Phac5g02487 5 42961257 42965542 Phac5g02487 5 42961257 42965542 ECH
Phac5g02487 5 42961257 42965542 Phac10g01920 10 41545692 41548999 PCT