Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02486 ATGGATGAAAGGTCAAGAAACGAAGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGAGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCACCTGGTGAGGACTGGTCTCTCATTGGTAAAATGAAGAACGGCAACACAGAAAGAGAAGAGTCTCTTCTCTCTCTTGGCTGCTTACCTTCTTCGAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACCAGGGTAACAACAAAGCCTCTTCACCGTTCCTTCAGTTCCCATCAACCCCACCTGTGATGGGAAAAGATGCTTCACAAAACTGTTGTCCGAAGGTGGCAGAGTTGCATAATGGTTGTGGTGGGGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCGCTTCTAAGCCACCGACTGAGTCACAGCCTGAGCAGCATAACAAGGTGGCTGGTAAAAAACCTGTTGATAACTATGGTGGGAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTAACAACAAGCAGGATGAAGAGAAAGCAATCACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTAAGAGTGTTGAAGAGTTCAGAGCTTTCTGCCTTTACCCGCAGTAAGCAAGAGAAGATATCTCTTGACTCGGCAATGAAATGA 1029 0.4713 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLIGKMKNGNTEREESLLSLGCLPSSNMSHAILSPNNGFQSKASPWPNYHNQGNNKASSPFLQFPSTPPVMGKDASQNCCPKVAELHNGCGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPTESQPEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTRSKQEKISLDSAMK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02486 342 MobiDBLite consensus disorder prediction 149 167 - -
Phac5g02486 342 Pfam AUX/IAA family 38 326 IPR033389 -
Phac5g02486 342 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
Phac5g02486 342 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Phac5g02486 342 MobiDBLite consensus disorder prediction 149 210 - -
Phac5g02486 342 FunFam Auxin-responsive protein 213 332 - -
Phac5g02486 342 MobiDBLite consensus disorder prediction 181 200 - -
Phac5g02486 342 MobiDBLite consensus disorder prediction 22 43 - -
Phac5g02486 342 Gene3D - 213 333 - -
Phac5g02486 342 SUPERFAMILY CAD & PB1 domains 211 318 - -
Phac5g02486 342 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02486 Phac-Chr5 42961257 42965542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02486 221 337 B3 DNA Binding Superfamily AT4G23980 33.333 9.94e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac5g02486 AUX_IAA 8.1e-72 CL0072