LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g02459	ATGGGAACAGCAGCAATTCCAGCAAATGTCAAGGACAATATAGAGTTCCACTTCCTTCCCGAGTATAATTCTTCCACACTTTATTTGTACATGTTTTTTGCTGAAATCCAGAAGCTTCAGGCAAACCAAACGAGAGAGTTCAACATTTTTGTAAATGGGGACATTTTAAATAATTATCCAATCAATCCTTTATACCTGCAGAGTGTGTATCACATAGCTCTAACTGAAAAACCGTTGGACATTTGGATTAATAAAACTAGTAGATCAACTCTTCCACCTCTTCTCAACGCCATTGAGATATATACCACAAGAAACCTCTCACAATCTGCAACATATCAAACAGATGTTGATGGTATAATAAATGTCAAGTCAATGTATGGAATCAAGAGAAACTGGCAAGGAGATCCTTGTATACCAGTAGCTTACTTGTGGGACGGTCTTAACTGCAGCTATGAATCTGGTTCAGCAAGAATTATATACTTGAACTTATCTTCCAGTGGTTTAACTGGTAATATAGCCCCTGGAATATCCAATCTGCAGTACTTGGAATATTTGGATTTGTCAAACAACAATTTGACCGGGGCCGTGCCTGAATTCCTACTTCAACTAAGCTTCTTAAGAGTTCTAAACCTAGAAGGCAATCAGCTATCAGGAACAATTCCAACGCAACTCATGGTACTTTCCCAGAACGGTTTACTTGAATCCAATTTTGGTGGAAATCCAAATCTTTGCTCCCCGGGTTCATGCAACAATAAAAATGGGAACAGAGTTGTAGTTTCACTGGTGGTATCGCTCGGTGGAGCTTTCGTGATACTAGTAATAACACTGATTTCTTTCTACATACACAAAAGGAGACAACCAGTTTCAGCTAGCAAACGGATTGGCTATTCCAGAATAAAGGAGGAACTAGAGACAAATAAACAAGAATTCACCTATGCTGAAGTCCTGAGCATGACCAAAAATTTTGAAAGAGTTGTAGGAAAAGGAGGATTTGCTACAGTCTACCATGGCTGCATAGATGGTACTGAGGTAGCTGTCAAAATGCTCTCTCCCTCAGCCCAAGGGTATCTGCAATTTAAGGCAGAGGCCAAATTTGTTGCTGTAGTTCATCATAAATTTTTAACTTCTCTAATAGGATATTGTGATGATGGCGAGAATATGGCTCTAATCTATGAGTATATGGCTAATGGAGACTTGGCAAAACATTTATCAGGCAAAAGCAAAAATATATTGAGTTGGAACCAACGACTTCAAATTGCAGTGGATGCTGCTGAAGGATTGGAGTATTTGCATCATGGCTGCAATGTACCAATTGTTCACAGAGATGTTAAGTCTAAGAACATCTTGGTGAATGAAAAATTGCGGGGTAAACTAGCTGATTTTGGGTTGTCAAAGATCTATCCTGATGAAAGTGACACCCATATGACCACAGTGGTAGCTGGCACCCTGGGATATCTTGATCCAGAGTACAATAGATCACACAGGTTGAATGGAAAAAGTGATGTTTTCAGTTTTGGAGTAGTTCTGCTTGAGATAATTACAGGTCAACCTGCTATAACCAGATCTGAAGACAAAACTCACATAGTTCAATGGGTTCATTCTGTGCTACTTGAAAGGGAGATCAATGATATTGTAGATTCAAGATTGCAGGGAGAATTTGACATTGATTCTGTAAAGAAGGTCTTAGACACTGCAATGGCTTGTGTAGCAGCCACTTCAATTCATAGGCCAACCATGAATGATGTAGTGAATGAACTGAAACAATGTTTGTCAAACAAGATGACTCCTCCCTTTGACTCTGATGATCTTGAGAGTTCATCCAACAGCTCAATCACTGTCTCCTTTGATGGAATTAGTGGAGAGAGCTCTCTAGAGAGATAG	1881	0.3939	MGTAAIPANVKDNIEFHFLPEYNSSTLYLYMFFAEIQKLQANQTREFNIFVNGDILNNYPINPLYLQSVYHIALTEKPLDIWINKTSRSTLPPLLNAIEIYTTRNLSQSATYQTDVDGIINVKSMYGIKRNWQGDPCIPVAYLWDGLNCSYESGSARIIYLNLSSSGLTGNIAPGISNLQYLEYLDLSNNNLTGAVPEFLLQLSFLRVLNLEGNQLSGTIPTQLMVLSQNGLLESNFGGNPNLCSPGSCNNKNGNRVVVSLVVSLGGAFVILVITLISFYIHKRRQPVSASKRIGYSRIKEELETNKQEFTYAEVLSMTKNFERVVGKGGFATVYHGCIDGTEVAVKMLSPSAQGYLQFKAEAKFVAVVHHKFLTSLIGYCDDGENMALIYEYMANGDLAKHLSGKSKNILSWNQRLQIAVDAAEGLEYLHHGCNVPIVHRDVKSKNILVNEKLRGKLADFGLSKIYPDESDTHMTTVVAGTLGYLDPEYNRSHRLNGKSDVFSFGVVLLEIITGQPAITRSEDKTHIVQWVHSVLLEREINDIVDSRLQGEFDIDSVKKVLDTAMACVAATSIHRPTMNDVVNELKQCLSNKMTPPFDSDDLESSSNSSITVSFDGISGESSLER*	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g02459	626	Pfam	Protein tyrosine and serine/threonine kinase	322	586	IPR001245	GO:0004672\|GO:0006468
	Phac5g02459	626	MobiDBLite	consensus disorder prediction	597	626	-	-
	Phac5g02459	626	Gene3D	Phosphorylase Kinase; domain 1	302	393	-	-
	Phac5g02459	626	SUPERFAMILY	L domain-like	141	243	-	-
	Phac5g02459	626	Pfam	Leucine rich repeat	161	216	IPR001611	GO:0005515
	Phac5g02459	626	Gene3D	Ribonuclease Inhibitor	120	237	IPR032675	-
	Phac5g02459	626	Gene3D	Transferase(Phosphotransferase) domain 1	394	608	-	-
	Phac5g02459	626	CDD	STKc_IRAK	326	588	-	-
	Phac5g02459	626	ProSitePatterns	Protein kinases ATP-binding region signature.	326	347	IPR017441	GO:0005524
	Phac5g02459	626	FunFam	Leucine-rich repeat receptor-like kinase	114	246	-	-
	Phac5g02459	626	PANTHER	OS07G0107800 PROTEIN-RELATED	1	591	-	-
	Phac5g02459	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	438	450	IPR008271	GO:0004672\|GO:0006468
	Phac5g02459	626	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	394	596	-	-
	Phac5g02459	626	PRINTS	Leucine-rich repeat signature	182	195	-	-
	Phac5g02459	626	PRINTS	Leucine-rich repeat signature	203	216	-	-
	Phac5g02459	626	Pfam	Malectin-like domain	1	102	IPR024788	-
	Phac5g02459	626	SMART	serkin_6	320	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g02459	626	ProSiteProfiles	Protein kinase domain profile.	320	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g02459	626	SUPERFAMILY	Protein kinase-like (PK-like)	304	586	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g02459	Phac-Chr5	42685993	42691285	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g02459	3	615	Receptor kinase-like Gene Family	AT1G07560	49.278	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Phac5g02459		PK_Tyr_Ser-Thr	3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g02459	-		-	gmx:100778537	1032.71