Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02450 ATGACGACAGTGCCAGGGCAATTGATTTGGGAGATCGTGAAGAAGAACAACTCTTTTTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAACCCAACAATCTCTACAATCTCAACACTTACAAGTACTCTGGTTTGGCGAACAAGAAAACTGTCACTATTCAGGCTGCTGGTAAAGACCAATCTGTGATATTGGCCACAACTAAGACTAAGAAACAAAATAAGCCTGCTTCCTTGCTTCACAAATCTGTCATGAAAAAAGAGTTCCGAAGAATGGCAAAGGCAGTGCAAAATCAGGTAGCGGATAACTACTACAGGCCTGATCTGAAAAAGGCAGCTCTGGCTAGGTTGAGCGCTGTCAATAGGAGCCTGAAAGTTGCAAAGTCTGGTGTGAAGAAGAGGAACAGACAGGCTGTGAAGGTTGTTGGCAGGAAGTGA 453 0.4525 MTTVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTYKYSGLANKKTVTIQAAGKDQSVILATTKTKKQNKPASLLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVVGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02450 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Phac5g02450 150 Gene3D - 6 133 - -
Phac5g02450 150 FunFam 60S ribosomal protein L28 5 133 - -
Phac5g02450 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02450 Phac-Chr5 42636232 42638159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02450 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 74.825 9.35e-78 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02450 K02903 - gmx:100500189 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02450 5 42636232 42638159 Phac5g02450 5 42636232 42638159 ECH