Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02449 ATGCAGGATCCAGCGTTGTTCCAACCCTTGAAACCCCACTTTCCCGAACAAGAGCAACTCAAGTGCCCGCGTTGCGATTCCATCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCGCAGCCTCGCCATTTCTGCAAAAATTGCAGAAGGTATTGGACCAAAGGAGGTGCATTGAGAAACATCCCCGTTGGGGGTGGAAGCAGAAAGAACGCTAAACGGTCATCCTCATCCACCACCACCACCAACACCAACACCAAACGCGCTTCCCCGTCACCTGCTATAGAACCCGGCCCGACCCGTATTTGCCCTGACCCGGTTGCTGGGGGTGGGAGTTTGGGTTCTCTTTTGGCATCAGGTGGTCATTTGGGGAACCTCTTGGAGGGTCTGAAATCAAGTGGGGCGAGTCTAAAAGCTGTGCAAATGGAGGAATTTGGGGAGAATGTTAGATCGGGTCAAATGGCGGATCCGGGTTCTGGTCGGAACCCTGTGGTGGAGATTGAAAGAAATGGGAATGCAGAGAGTTTTCTGAGTATGCAAAACGGTGATTCAAGCTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTTCACTCCTGGGTCTAGCTATGAAAATTTATGA 630 0.5016 MQDPALFQPLKPHFPEQEQLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTTTTNTNTKRASPSPAIEPGPTRICPDPVAGGGSLGSLLASGGHLGNLLEGLKSSGASLKAVQMEEFGENVRSGQMADPGSGRNPVVEIERNGNAESFLSMQNGDSSCWNGTNGWSNLAIFTPGSSYENL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02449 209 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 114 IPR045174 GO:0003700|GO:0006355
Phac5g02449 209 MobiDBLite consensus disorder prediction 71 92 - -
Phac5g02449 209 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Phac5g02449 209 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Phac5g02449 209 MobiDBLite consensus disorder prediction 62 100 - -
Phac5g02449 209 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02449 Phac-Chr5 42631415 42633484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02449 11 128 C2C2-Dof Transcription Factor Family AT1G51700 56.296 1.23e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phac5g02449 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02449 - - gmx:100798927 333.569