Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02403 ATGAGTGATTCAAGAAGCAGCACACAAGCTTGTGCTGCTTGCAAGTACCAACGCAGGAAGTGCGGATCCAAGTGCATTCTTGCGCCGTTTTTTCCTCATCACCGCGAAAAACAGTTTCTCCTTGCCCATAGGCTCTTCGGAGTTGGAAAAATCACGAACATGATCAAGCCTCTCGATCCTGGTCGCAGAAACATAGCCATGGCCACCATTATCTACGAGTCTGATGTGAGAGCCAAGGACCCTGTTGGGGGCTGCTTGCGGATCATTGAAAACTTACAATCTCAGATTGCATACTCTCAAACTCAACTCCAACTACTGCTTCAATACCTTGCCTTCTTCAGACGATCACCACCACCCTCCTCTTCATTCCATCCTTCTCTTTTACCACTTCAATTCCAAAGACAATCTAAATCGAGAAATCCGTTGCAGTTTCAAGAACAGAAAGATCCTTATCTTTTATTGCAAGAAGATATGAAGTTAGAAGATACATGA 492 0.4451 MSDSRSSTQACAACKYQRRKCGSKCILAPFFPHHREKQFLLAHRLFGVGKITNMIKPLDPGRRNIAMATIIYESDVRAKDPVGGCLRIIENLQSQIAYSQTQLQLLLQYLAFFRRSPPPSSSFHPSLLPLQFQRQSKSRNPLQFQEQKDPYLLLQEDMKLEDT* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02403 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phac5g02403 163 Pfam Lateral organ boundaries (LOB) domain 10 105 IPR004883 -
Phac5g02403 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02403 Phac-Chr5 42423560 42425266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02403 9 114 AS2 family AT3G13850 59.434 7.40e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac5g02403 LOB 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02403 - - pvu:PHAVU_005G158800g 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02403 5 42423560 42425266 Phac10g01834 10 40900113 40902226 PCT