Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02393 ATGAGAATTCAAAAGGGTCCAAATATGAGAAAAGACGATGAAGGGTTTGATGTTCCAAAAACCATGTCTAATTTGACTTCTGCATCAGGTGAAGCTAGTGCTTCTTCAGGCACCAGAACTGAAATTGGTTCTGATTACTCACAACAGTACTTTGCTACTCCACCAACTCAAACCCAGACTCCACAAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTCGCGTTGTCTCCAAAGACTCTTTTGGCGACAAATAGGTTCATCTGTGAGATCTGCAACAAAGGCTTTCAGAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAATCTGCCATGGAAGTTGAAGCAGAGAACGAGCAAAGAGATAAGGAAGAAGGTTTATGTGTGCCCAGAAGCAACTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATAGACATGGGAATAGGCATTCCCAACAACTCAGCTACAACTCCAACAACACCTGCAGCAGGAGTAGTGATATCTTCATCCTCTCATCATCATCATCATCATCAAGAGATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAAGAAGGTTTCATCCCCCCTTGGCTTCAACAACCACCCTCCACCATCGATCTCTCCTCCTCCTCCTCCTCCTTCTTCTCTCACCATGAAAACCCTAACCCTAGAGGTGGTGGGGGAGGTGGTCCCATTCTCCCTCCCTACCCAACAGCGCCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATCACCAAAACTGGCTCCATGATTAGGACCCACCAACAACCTCACGTGTCTGCTGACTCTTTCAATTTGTCCTCACGTGACCACCAGATGACCCCCACTTCCAACACCACCACTGGTGTTGGTGTTGCTGTTTCTTCATCACTTCTTCACCATGTTATCAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTCGAGGACCGTGCCGCTGGTGGCGGCGGTGCCGGCGGAGGCAATTATAACGAGACGATGACCAGAGATTTCTTGGGTCTTCGACCCCTCTCTCACACTGATATTCTCAACATCGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGAAGTTGA 1413 0.4876 MRIQKGPNMRKDDEGFDVPKTMSNLTSASGEASASSGTRTEIGSDYSQQYFATPPTQTQTPQKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEATCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIDMGIGIPNNSATTPTTPAAGVVISSSSHHHHHHQEIHGNNFPLKKEQEGFIPPWLQQPPSTIDLSSSSSSFFSHHENPNPRGGGGGGPILPPYPTAPSPPHMSATALLQKAAQMGATITKTGSMIRTHQQPHVSADSFNLSSRDHQMTPTSNTTTGVGVAVSSSLLHHVINSFSSPFEGTSFEDRAAGGGGAGGGNYNETMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQGS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02393 470 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Phac5g02393 470 MobiDBLite consensus disorder prediction 315 329 - -
Phac5g02393 470 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Phac5g02393 470 Gene3D Classic Zinc Finger 146 225 - -
Phac5g02393 470 FunFam protein indeterminate-domain 12-like 71 139 - -
Phac5g02393 470 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Phac5g02393 470 Gene3D Classic Zinc Finger 71 142 - -
Phac5g02393 470 MobiDBLite consensus disorder prediction 288 306 - -
Phac5g02393 470 MobiDBLite consensus disorder prediction 1 76 - -
Phac5g02393 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Phac5g02393 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 458 IPR031140 -
Phac5g02393 470 MobiDBLite consensus disorder prediction 1 18 - -
Phac5g02393 470 MobiDBLite consensus disorder prediction 20 66 - -
Phac5g02393 470 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Phac5g02393 470 MobiDBLite consensus disorder prediction 288 332 - -
Phac5g02393 470 SMART c2h2final6 168 188 IPR013087 -
Phac5g02393 470 SMART c2h2final6 133 163 IPR013087 -
Phac5g02393 470 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02393 Phac-Chr5 42402819 42408330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02393 18 458 IDZ Gene Family AT1G55110 50.858 2.07e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g02393 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02393 K25870 - gmx:100819692 666.381