Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02383 ATGGATTATTATCCTTCTCAACATCACTTGCAATTCGAATCTGAACCTGGCGTCTACCATGGTGATTTCAATGATGAGCTCGTAAAACCCTCTTCCAATCCTCGTGATCCGTCTTCAGGGAAACTGTTCGTTGGGGGCATTTCGTGGGAGACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTGATAATGACAAATAAACTTTCCGGAAGGCCACGTGGGTTTGGCTTTGTTACATTTGCCGATTCAGCTGTAGCAGATGAAGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGTATTGGAGTACTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCAGTGACGATGAGTTGAGGGGATACTTTTTACCTTATGGCGATGTTATTGAGTGCCAAATCATGGTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAACGAAGATTCAGTCGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACAGCAGTACCTCACGAAAGTCATATGGTGGTTTTGGCAATGGAATGGATGGATATGGTGGGAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACATTATACAGATTCTGGAATGAATGGAGCATATGGCTATTTTGAGGGAAGCTTTGGTGGAAGTGCTGCCACAGTTTATGGTGGTTATTGTGGATATGGTTATGGCTTTGGATATGGTGGGCCAATGTATTGCTATGGCGGATATGGACTCAATTCTTTTGGTAATCCTGGGGTTTATGGTGGTGGTGGCGGCACTATTCCCCATTTAGATGGTAATGCATATGGAAGAAATGGTAGTTTCAACCGCACCAGTGGCTATGACAGTGGGAAAGGAGCTGAGAAGGACGATGGTCCTACGACTGGAAGGTACCATCCTTACTGGAAATGA 1068 0.4298 MDYYPSQHHLQFESEPGVYHGDFNDELVKPSSNPRDPSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEGIGVLKTKKIFVGGIPQLFSDDELRGYFLPYGDVIECQIMVDHNTGRSRGFGFVTFDNEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDHSSTSRKSYGGFGNGMDGYGGNSSRNRNHGKRGGHYTDSGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSFGNPGVYGGGGGTIPHLDGNAYGRNGSFNRTSGYDSGKGAEKDDGPTTGRYHPYWK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02383 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Phac5g02383 355 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 36 354 - -
Phac5g02383 355 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 120 256 - -
Phac5g02383 355 Gene3D - 122 259 IPR012677 -
Phac5g02383 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Phac5g02383 355 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Phac5g02383 355 SMART rrm1_1 130 203 IPR000504 GO:0003723
Phac5g02383 355 SMART rrm1_1 41 112 IPR000504 GO:0003723
Phac5g02383 355 CDD RRM1_hnRNPA_hnRNPD_like 42 112 - -
Phac5g02383 355 MobiDBLite consensus disorder prediction 329 355 - -
Phac5g02383 355 SUPERFAMILY RNA-binding domain, RBD 127 235 IPR035979 GO:0003676
Phac5g02383 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Phac5g02383 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Phac5g02383 355 Gene3D - 39 121 IPR012677 -
Phac5g02383 355 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02383 Phac-Chr5 42349604 42353253 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02383 35 219 Eukaryotic Initiation Factors Gene Family AT1G71770 27.723 8.87e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02383 K12741 - gmx:100818080 539.265