Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02358 ATGCATGAAGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCTGAGCTTCCTGAGCCTGTCTTAGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTCGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCGACAATATTTGAAGTTGTTGCTGGTGGAGCAAAGAAGCCACTTAAAGAGAAGTCATCAGTTTCAAACAACAGTGGAAACAAATCTAAGTCTATCACTAAAGTGCGGGTTTCTGAAACCCAGGGCAGACTGTCAAAGGCATTGTTACAACAACCAAAGGATGAGGAAGAAGTAGTAGAAGAGCAAGAGCAAGATGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACCCCTGCCAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCCTGCAGTAACAAGAGAGCTCGCTAA 687 0.4323 MHEDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVAGGAKKPLKEKSSVSNNSGNKSKSITKVRVSETQGRLSKALLQQPKDEEEVVEEQEQDDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02358 228 ProSitePatterns Zinc finger PHD-type signature. 176 222 IPR019786 -
Phac5g02358 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 224 IPR013083 -
Phac5g02358 228 FunFam PHD finger alfin-like protein 168 224 - -
Phac5g02358 228 SUPERFAMILY FYVE/PHD zinc finger 165 226 IPR011011 -
Phac5g02358 228 Pfam PHD-finger 176 225 IPR019787 -
Phac5g02358 228 SMART PHD_3 175 223 IPR001965 -
Phac5g02358 228 MobiDBLite consensus disorder prediction 157 171 - -
Phac5g02358 228 MobiDBLite consensus disorder prediction 116 171 - -
Phac5g02358 228 Pfam Alfin 2 109 IPR021998 GO:0006355|GO:0042393
Phac5g02358 228 MobiDBLite consensus disorder prediction 118 148 - -
Phac5g02358 228 CDD PHD_AL_plant 175 225 IPR044104 -
Phac5g02358 228 ProSiteProfiles Zinc finger PHD-type profile. 173 225 IPR019787 -
Phac5g02358 228 PANTHER CPG BINDING PROTEIN 3 228 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02358 Phac-Chr5 42207463 42212254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02358 1 228 Alfin-like Transcription Factor Family AT3G42790 71.930 1.46e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac5g02358 Alfin 1.1e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02358 K26274 - gmx:100170696 371.703