Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02357 ATGGAAGCGCGAAGTCGCTCCGTCGAAGACATATTCGAGGATTTCAAGGGCCGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCTGAGCTTCCTGAGCCTGTCTTAGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTCGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCGACAATATTTGAAGTTGTTGCTGGTGGAGCAAAGAAGCCACTTAAAGAGAAGTCATCAGTTTCAAACAACAGTGGAAACAAATCTAAGTCTATCACTAAAGTGCGGGTTTCTGAAACCCAGGGCAGACTGTCAAAGGCATTGTTACAACAACCAAAGGATGAGGAAGAAGTAGTAGAAGAGCAAGAGCAAGATGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACCCCTGCCAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCCTGCAGTAACAAGAGAGCTCGCTAA 762 0.4462 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVAGGAKKPLKEKSSVSNNSGNKSKSITKVRVSETQGRLSKALLQQPKDEEEVVEEQEQDDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02357 253 MobiDBLite consensus disorder prediction 182 196 - -
Phac5g02357 253 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Phac5g02357 253 Pfam PHD-finger 201 250 IPR019787 -
Phac5g02357 253 MobiDBLite consensus disorder prediction 141 196 - -
Phac5g02357 253 FunFam PHD finger alfin-like protein 193 249 - -
Phac5g02357 253 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Phac5g02357 253 MobiDBLite consensus disorder prediction 143 173 - -
Phac5g02357 253 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Phac5g02357 253 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Phac5g02357 253 SMART PHD_3 200 248 IPR001965 -
Phac5g02357 253 CDD PHD_AL_plant 200 250 IPR044104 -
Phac5g02357 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Phac5g02357 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02357 Phac-Chr5 42207463 42212254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02357 6 253 Alfin-like Transcription Factor Family AT3G42790 72.581 1.58e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac5g02357 Alfin 4.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02357 K26274 - gmx:100170696 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01772 10 40371104 40375435 Phac5g02357 5 42207463 42212254 ECH
Phac5g02357 5 42207463 42212254 Phac5g02357 5 42207463 42212254 ECH
Phac5g02357 5 42207463 42212254 Phac10g01772 10 40371104 40375435 PCT