Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02354 ATGAATTGCTTGTGTGAGAAAGACTGTGGTCTATTTTCTTCTCATTCAACATCACCCAATGTTCTTGGATGCCCATCATGGGGGCCTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATGTTCTGCCACAACAATGCCACAGGACCAAAACATTGATCTTTCAATTCCAAGAACTGGATTCATCTTCGACTCATTCGGGTCAATCTTCTACCAAACTTGGTTCATCACAATCCGGTCAAATGTCTGTTCAGCATAGCTCTACAGATTCAACACATGGCATCAGATCATTTATGGGGAATCAGGATTTCACCTTCCCTCCTCCACTACCGGATCACAGCCAAACACTTGCTCATATTGCAGGTCACTATGCTGATCCAGGCTATAGCAGCCTAATGGCTTCTTCATATGGTTCACAGTTTAAGCCAGTGGAAACTGCTCCTATTCGAATTCCTCTGCAATTGGACATCACAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGGCAGAATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGGAAACCTTATCTTCACGAGTCCCGCCATCTGCATGCACTGAAGAGAGCAAGAGGAGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTACACGTGGAAATATTGCAGAATCTAGCATGCATCACATGGAAAACTACAGAGATGGTGATGACAATGCCACATATGCTTCTAACAGTGATGCAAGAAACATGCAGAATCATACATCTGATAAGGGTGGTGGCACCACTCAGCAGCACCCTCTATTTGTCTACATGTGA 843 0.4377 MNCLCEKDCGLFSSHSTSPNVLGCPSWGPSESRSLSLKVDVLPQQCHRTKTLIFQFQELDSSSTHSGQSSTKLGSSQSGQMSVQHSSTDSTHGIRSFMGNQDFTFPPPLPDHSQTLAHIAGHYADPGYSSLMASSYGSQFKPVETAPIRIPLQLDITEEPIYVNSKQYHAILRRRQNRAKLEVQNKPIKDRKPYLHESRHLHALKRARGAGGRFLNTKKLQQSTRTRGNIAESSMHHMENYRDGDDNATYASNSDARNMQNHTSDKGGGTTQQHPLFVYM* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02354 280 PRINTS CCAAT-binding transcription factor subunit B signature 160 182 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 PRINTS CCAAT-binding transcription factor subunit B signature 191 214 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 ProSiteProfiles NF-YA/HAP2 family profile. 157 217 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 159 214 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 MobiDBLite consensus disorder prediction 62 91 - -
Phac5g02354 280 SMART cbf3 156 217 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 Gene3D - 157 218 - -
Phac5g02354 280 MobiDBLite consensus disorder prediction 246 271 - -
Phac5g02354 280 ProSitePatterns NF-YA/HAP2 subunit signature. 162 182 IPR018362 GO:0003677|GO:0016602
Phac5g02354 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 44 264 IPR001289 GO:0003700|GO:0006355
Phac5g02354 280 MobiDBLite consensus disorder prediction 220 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02354 Phac-Chr5 42202258 42206005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02354 14 263 CCAAT-HAP2 Transcription Factor Family AT1G17590 40.925 1.01e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac5g02354 CBFB_NFYA 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02354 K08064 - gmx:100803893 410.994