Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02353 ATGATAGAACATTTTCTTCCAAAATTGGAAACTGTATTACATGGTTTAATCAGCATCAGTCAAATGTCTGTTCAGCATAGCTCTACAGATTCAACACATGGCATCAGATCATTTATGGGGAATCAGGATTTCACCTTCCCTCCTCCACTACCGGATCACAGCCAAACACTTGCTCATATTGCAGGTCACTATGCTGATCCAGGCTATAGCAGCCTAATGGCTTCTTCATATGGTTCACAGTTTAAGCCAGTGGAAACTGCTCCTATTCGAATTCCTCTGCAATTGGACATCACAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGGCAGAATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGGAAAGTAATAAGCGTGTCTATGTTTTCTCTCTACCATTTCTCTTTAACCAAACTAAGAACACTGTGA 462 0.4091 MIEHFLPKLETVLHGLISISQMSVQHSSTDSTHGIRSFMGNQDFTFPPPLPDHSQTLAHIAGHYADPGYSSLMASSYGSQFKPVETAPIRIPLQLDITEEPIYVNSKQYHAILRRRQNRAKLEVQNKPIKDRKVISVSMFSLYHFSLTKLRTL* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02353 153 ProSitePatterns NF-YA/HAP2 subunit signature. 103 123 IPR018362 GO:0003677|GO:0016602
Phac5g02353 153 ProSiteProfiles NF-YA/HAP2 family profile. 98 133 IPR001289 GO:0003700|GO:0006355
Phac5g02353 153 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 133 IPR001289 GO:0003700|GO:0006355
Phac5g02353 153 Gene3D - 98 147 - -
Phac5g02353 153 SMART cbf3 97 152 IPR001289 GO:0003700|GO:0006355
Phac5g02353 153 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 100 133 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02353 Phac-Chr5 42202258 42206005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02353 54 133 CCAAT-HAP2 Transcription Factor Family AT1G17590 50.617 4.89e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac5g02353 CBFB_NFYA 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02353 K08064 - gmx:100803893 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02353 5 42202258 42206005 Phac5g02353 5 42202258 42206005 ECH
Phac5g02353 5 42202258 42206005 Phac3g01826 3 20845275 20849701 PCT
Phac11g00704 11 4613742 4615734 Phac5g02353 5 42202258 42206005 PCT