Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02339 ATGGAGCACCCTTTTTCCTCCAAGGAAAGAGAAATTGGGGATTGGCAATCTTCCGGAACTCAGTTGGTGGGATCAACATCGTTAGATGCCAGAATGAGCAATTCAATATCAGAGGATATGTCCAATAGCTTCTCAGAGCTCATGAGCTTTGATACTTATGCTGGTTTGTGCAACAGCCCATCCATATCTGATCAGATTTTGGCTAATGAGCTTCCGTCATTTGCTTCATTATCATATTCATTGCCTGATGGATTCAATATAGTCCAACAGAACAATGGGCAATGCTATATGTCAGAAGTTGGCAGAAATAACAACGATATGGAAAGCTCTCCCATTTATGGGGAGAAAGTTGCGTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAGTGATGCAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATTAATGGCTCTCCTCAACATCTTAATAACTCTGTCGCAGGTAATTATATAATGTCCAGGCCACCTGCTTTGTCACTCGACGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCGTTAAGGATGGTGATCAATTAATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTTGCAGGATATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGATCGTTTCCTAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTTCATGAGTGGACGTCAAATGTTGGTTATTACAGTATGAATGAGTATTTAAGGTTTGAGCATGCAGTTAATCACCATGTTCGTGGATCAATCGCATTTCCCATATTTGATGTGCACTCAGAATTGTCATGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAGCAGAGAATTGGAAATTGTTTGCCGTGCACTCCAGCTTGTAAATTTAAGGACTGTCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGATCTGTCTGCCATGCCCATAGATTACCACTGGCACTGACATGGCTTCCCTGTTGTTACACTGAGGGATCAAGAGGTGAAGCTACAATGATACGAATTAAAGGGGGTCATTCAACTAATAGTGGAAAAAGCATACTCTGCATTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGAAGGATTTGTCCGTGCATGCACAGAACATCCTCTTGAGGAAGGGAAAGGTATAGCTGGGAAGGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGACATACGATGTTAGTGAATATCCACTTGTCCACCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATAATGATGATTACCTATTGGAATTCTTTCTGCCTGTTAATATGAAAGGGGGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGAACAGTTTCAGATATCGAATTATCAAGAATAGAAAGTTCACAAGAAGGGTTTGGAAAGAAAAATGCCCCCTGTTTTTCTCCTTTGTCAAGTCGAAACTCTGAAGTACCATTAGAAAATGGTGACTGTCATTCTGTCCCAATGATGTCATTGAAGGCAACTAATGCAAGAGACAACGAAATTGAGCCTTCTACTCACCAGGGAAGAAATGGAACAAAAAGACAGGTCAAGAAAAATAGAAGTACATCAGAGAAGAGTGTTAGCTTGAGTGTTCTCCAACAGTACTTTTCGGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTCGACTCTGTCCAAGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTCGTGGCAGGAGGGTCAACCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAGTATTGTAAAAGACGCTGCACCTATTACACAAAAATCAGTCTCAGTACCACCTGCACCTTGTAGTGAAGTTGAGAATTTTGCATTTAAGTTGGACGAAAAGTTGAAGAAAACCAATGCTTTTTCCGTTGGTTGTAGTGAAGATTCAAAATCAATGGCAATTGATGATGGGTCATGCGAAATGGAAAGGCTTTGCATCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTTTTCCAAAAGAACAGGATAAATGGATTCTGAACAAGAGTGGTTTGAGAGTAGAAAATTTCAAATGCAGTATTCGTGGCCAGAGTTCAAATTCCTTGTTTGGCAATCAGATGCACATTGGTGTAGATGGAGATGCTGGGGTTGTTGAACCTAACCACCCTAGTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATAGCATTTCGTCAGGTTCTCAGAGCTTCAAGAACCAGAATCAGTCCAATGTTAAGTCAACCATCGTTGACAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCGATCTGCTGGTTGTTTCAGCTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGGTCATTCCAGCTAAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCCGATTTGCAAGAGTGTCTAGAAATATTGGATGATATTGGTACATGCAACGTCAGGTTTCTTGTTCGTGATTTACCTCTCATTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2940 0.4109 MEHPFSSKEREIGDWQSSGTQLVGSTSLDARMSNSISEDMSNSFSELMSFDTYAGLCNSPSISDQILANELPSFASLSYSLPDGFNIVQQNNGQCYMSEVGRNNNDMESSPIYGEKVACQQMDTLLGFLSDANEANNLNSKLKINGSPQHLNNSVAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPVKDGDQLILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSDRFLGLPGRVFTSKVHEWTSNVGYYSMNEYLRFEHAVNHHVRGSIAFPIFDVHSELSCCAVLEIVTTKEKPDFSRELEIVCRALQLVNLRTVKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYTEGSRGEATMIRIKGGHSTNSGKSILCIEESACYITDRALEGFVRACTEHPLEEGKGIAGKALRSNHPFFCPDVKTYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNNDDYLLEFFLPVNMKGGSEQQLLLDNLSGTMQRICSSLRTVSDIELSRIESSQEGFGKKNAPCFSPLSSRNSEVPLENGDCHSVPMMSLKATNARDNEIEPSTHQGRNGTKRQVKKNRSTSEKSVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGSTIQETDAHKSLLFPEKSIVKDAAPITQKSVSVPPAPCSEVENFAFKLDEKLKKTNAFSVGCSEDSKSMAIDDGSCEMERLCIKVQDCPEQACLGSVFPKEQDKWILNKSGLRVENFKCSIRGQSSNSLFGNQMHIGVDGDAGVVEPNHPSSSSLTDSSNGSGSMMHSISSGSQSFKNQNQSNVKSTIVDSGSKLIVKAIYREDTIRFKFDRSAGCFSLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLEILDDIGTCNVRFLVRDLPLILSSSGSSNSYLGGSS* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02339 979 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Phac5g02339 979 Pfam PB1 domain 882 960 IPR000270 GO:0005515
Phac5g02339 979 SUPERFAMILY CAD & PB1 domains 874 961 - -
Phac5g02339 979 SMART PB1_new 879 961 IPR000270 GO:0005515
Phac5g02339 979 MobiDBLite consensus disorder prediction 572 602 - -
Phac5g02339 979 MobiDBLite consensus disorder prediction 826 863 - -
Phac5g02339 979 MobiDBLite consensus disorder prediction 1 23 - -
Phac5g02339 979 MobiDBLite consensus disorder prediction 832 863 - -
Phac5g02339 979 Gene3D - 876 958 - -
Phac5g02339 979 PANTHER PROTEIN NLP8 145 971 IPR045012 GO:0003700
Phac5g02339 979 Pfam RWP-RK domain 604 651 IPR003035 -
Phac5g02339 979 ProSiteProfiles PB1 domain profile. 879 959 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02339 Phac-Chr5 42153167 42163792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02339 1 976 NLP Transcription Factor Family AT2G43500 49.037 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac5g02339 PB1 2.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02339 - - gmx:100804426 1546.18