Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02326 ATGCCGCCTCCTACAAAATCCCTCGAAAGCGAGGACTGGGGAACCCCAACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCGCCGATTCCGATCTCATGGAACTCTTCGCTCCCTACGGTTCTCTCGATACTCTCATTTCCTATTCCCCACGCACCTTCGCTTACCTCTTGTTTGGACGCGTCGAAGACGCTAAGGCTGCGAAAACCAACTTACAAGGCGCGTTGCTCCGCGGCTTTCAAATCAGAATCGAATTTGCAGTACCGGCAAGACCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACGCTGTACCGTTGGAGGAATTGGAAGCGGAATTTCGTAAATTCGGTAAGGTTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTTTCAATCTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGCGGCCATATTTTTGTAGACTTCCTTAGGTCACAATCGACGAATAGAGGTGTAGAATATAAGGTCGCACAACCTCGCAAGGATTTTTTGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTGCAATCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCACTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATCTGACACCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGACCTTTACCTGATGGATTAGTTAATGAGCATCCATTTCGACCACCACAAACGGATGTGTTTGGTCAAAATCGTCCTATAGTTCCAAATAATTTTCCCGGGCAATTGCCACCTGGTGGTATTAGTGGACCTAATGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACTCAGGTCCTGATTTTAATGAGATGGGCACACTTCACAAATTTCAAGATGGTAGCTCTAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCACCTCTGGTCCATGGGATGTAATTGACACAAACCAATTTTCAAGAGATTCTAAACGCTCGAGGATAGATGACGCTATGCTTATTGGTGATGCTCCATTTCCTTTAAGAAATATTGATGACCGTGGATTAAGATTAGAACAACCATTTGCAATTGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCAGGAGTTCCTGGTTCTGTCCAACCTGATAATGAACATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGACTGGATATGTTAACGAAACACTATGCTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCCGGTGTTGCCAAGTTTACTGATAACACCACTCTATTTTTGGTACCTCTTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGATTATATGGTGTGGTTCTTAAGTTTCCATTAGTTCCAAGTAGCACATCTGTTCAACAAGCAATGCATTTTCCTTCACCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCTGAGTATGGTTCAATCTCTATAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACCACTTCATCTTGCTACGAGCGTCACTCCTCCACCTCATTCTGTTCCTCCTGATTATGCTTCTACTTATACAGCTTCTGCATCTCAAGCGGGAGTTACACTGACCCCTGAACTTATTGCGACTTTAACTTCCTTTCTGCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACTGTGGTTGGTCCTTCTAATGTGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTGCAGAACCACCTAGTTATCATACTCAACAGTTTGGGAGTATTCATAATTCTCAATATCCTTATCCACCTGCGTCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTTCTCATTTCCATGATACGGCTTCATGTCTTCAGCAGCTAGGTGCTGTTTCATCGTCTACATCCTTGACTAATTTCATTATACCTTCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGTCGGTCAACAGTATCAGGTGGAAGTCCCCCATGGCTCTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCCAAGGCATTCCAACAACCTAATAATTTTATTCCCTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATGTGGAGCTGGCCAGGGAAACTCCGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAGATACAGCAACAGCAAACTCAAGGAGAGCATGGGCCTGGAAATCAGCAATAA 2877 0.4432 MPPPTKSLESEDWGTPTNNLWVGNLPPEVADSDLMELFAPYGSLDTLISYSPRTFAYLLFGRVEDAKAAKTNLQGALLRGFQIRIEFAVPARPCKQLWVGGVSHAVPLEELEAEFRKFGKVEDFKFFRDRRTACVEFFNLDDATRAMKVMNGKRLGGGHIFVDFLRSQSTNRGVEYKVAQPRKDFLVDQGQFQARPQHLQSSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSTDEARRAKEGLQGRLFNDPRITIMYSSSDLTPGKDYPGFYPGSKGPLPDGLVNEHPFRPPQTDVFGQNRPIVPNNFPGQLPPGGISGPNVPMRPFVPQGLEPLNSGPDFNEMGTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPTSGPWDVIDTNQFSRDSKRSRIDDAMLIGDAPFPLRNIDDRGLRLEQPFAIDPIIDGGGSGPKSHLGPVGTRITSGVPGSVQPDNEHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFTDNTTLFLVPLSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSVQQAMHFPSPSTQYVQQIPPSQPEYGSISIKEQPILPMEYNRLLHDDSKRLPKPLHLATSVTPPPHSVPPDYASTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSNVKPPFPSVASNDGNQSHLWKQDQQTAEPPSYHTQQFGSIHNSQYPYPPASSTGHPAQVVSGSSHFHDTASCLQQLGAVSSSTSLTNFIIPSQNGQEAVPPQVGQQYQVEVPHGSEKGYGVVQGTDPSVLYSSKAFQQPNNFIPSSNQVSNAASQQHMNSEPPNQQLQPALCGAGQGNSELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02326 958 CDD RRM_SF 97 163 - -
Phac5g02326 958 Gene3D - 189 287 IPR012677 -
Phac5g02326 958 Gene3D - 94 173 IPR012677 -
Phac5g02326 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Phac5g02326 958 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Phac5g02326 958 Pfam SPOC domain 488 605 IPR012921 -
Phac5g02326 958 MobiDBLite consensus disorder prediction 745 803 - -
Phac5g02326 958 FunFam Flowering time control protein FPA 10 92 - -
Phac5g02326 958 SUPERFAMILY RNA-binding domain, RBD 196 285 IPR035979 GO:0003676
Phac5g02326 958 Gene3D - 3 93 IPR012677 -
Phac5g02326 958 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 88 - -
Phac5g02326 958 SMART rrm1_1 96 163 IPR000504 GO:0003723
Phac5g02326 958 SMART rrm1_1 19 86 IPR000504 GO:0003723
Phac5g02326 958 SMART rrm1_1 212 280 IPR000504 GO:0003723
Phac5g02326 958 MobiDBLite consensus disorder prediction 676 696 - -
Phac5g02326 958 MobiDBLite consensus disorder prediction 736 803 - -
Phac5g02326 958 CDD RRM_SF 20 86 - -
Phac5g02326 958 FunFam flowering time control protein FPA 204 297 - -
Phac5g02326 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Phac5g02326 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Phac5g02326 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 277 IPR000504 GO:0003723
Phac5g02326 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Phac5g02326 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 284 IPR000504 GO:0003723
Phac5g02326 958 MobiDBLite consensus disorder prediction 376 396 - -
Phac5g02326 958 CDD SPOC_FPA-like 493 613 - -
Phac5g02326 958 MobiDBLite consensus disorder prediction 881 913 - -
Phac5g02326 958 MobiDBLite consensus disorder prediction 881 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02326 Phac-Chr5 42043551 42052995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02326 19 274 Eukaryotic Initiation Factors Gene Family AT4G34110 23.843 1.18e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02326 - - gmx:100806555 1499.18