Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02325 ATGCCGCCTCCTACAAAATCCCTCGAAAGCGAGGACTGGGGAACCCCAACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCGCCGATTCCGATCTCATGGAACTCTTCGCTCCCTACGGTTCTCTCGATACTCTCATTTCCTATTCCCCACGCACCTTCGCTTACCTCTTGTTTGGACGCGTCGAAGACGCTAAGGCTGCGAAAACCAACTTACAAGGCGCGTTGCTCCGCGGCTTTCAAATCAGAATCGAATTTGCAGTACCGGCAAGACCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACGCTGTACCGTTGGAGGAATTGGAAGCGGAATTTCGTAAATTCGGTAAGGTTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTTTCAATCTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGCGGCCATATTTTTGTAGACTTCCTTAGGTCACAATCGACGAATAGACATTTGCAATCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCACTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATCTGACACCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGACCTTTACCTGATGGATTAGTTAATGAGCATCCATTTCGACCACCACAAACGGATGTGTTTGGTCAAAATCGTCCTATAGTTCCAAATAATTTTCCCGGGCAATTGCCACCTGGTGGTATTAGTGGACCTAATGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACTCAGGTCCTGATTTTAATGAGATGGGCACACTTCACAAATTTCAAGATGGTAGCTCTAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCACCTCTGGTCCATGGGATGTAATTGACACAAACCAATTTTCAAGAGATTCTAAACGCTCGAGGATAGATGACGCTATGCTTATTGGTGATGCTCCATTTCCTTTAAGAAATATTGATGACCGTGGATTAAGATTAGAACAACCATTTGCAATTGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCAGGAGTTCCTGGTTCTGTCCAACCTGATAATGAACATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGACTGGATATGTTAACGAAACACTATGCTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCCGGTGTTGCCAAGTTTACTGATAACACCACTCTATTTTTGGTACCTCTTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGATTATATGGTGTGGTTCTTAAGTTTCCATTAGTTCCAAGTAGCACATCTGTTCAACAAGCAATGCATTTTCCTTCACCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCTGAGTATGGTTCAATCTCTATAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACCACTTCATCTTGCTACGAGCGTCACTCCTCCACCTCATTCTGTTCCTCCTGATTATGCTTCTACTTATACAGCTTCTGCATCTCAAGCGGGAGTTACACTGACCCCTGAACTTATTGCGACTTTAACTTCCTTTCTGCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACTGTGGTTGGTCCTTCTAATGTGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTGCAGAACCACCTAGTTATCATACTCAACAGTTTGGGAGTATTCATAATTCTCAATATCCTTATCCACCTGCGTCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTTCTCATTTCCATGATACGGCTTCATGTCTTCAGCAGCTAGGTGCTGTTTCATCGTCTACATCCTTGACTAATTTCATTATACCTTCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGTCGGTCAACAGTATCAGGTGGAAGTCCCCCATGGCTCTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCCAAGGCATTCCAACAACCTAATAATTTTATTCCCTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATGTGGAGCTGGCCAGGGAAACTCCGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAGATACAGCAACAGCAAACTCAAGGAGAGCATGGGCCTGGAAATCAGCAATAA 2802 0.4422 MPPPTKSLESEDWGTPTNNLWVGNLPPEVADSDLMELFAPYGSLDTLISYSPRTFAYLLFGRVEDAKAAKTNLQGALLRGFQIRIEFAVPARPCKQLWVGGVSHAVPLEELEAEFRKFGKVEDFKFFRDRRTACVEFFNLDDATRAMKVMNGKRLGGGHIFVDFLRSQSTNRHLQSSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSTDEARRAKEGLQGRLFNDPRITIMYSSSDLTPGKDYPGFYPGSKGPLPDGLVNEHPFRPPQTDVFGQNRPIVPNNFPGQLPPGGISGPNVPMRPFVPQGLEPLNSGPDFNEMGTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPTSGPWDVIDTNQFSRDSKRSRIDDAMLIGDAPFPLRNIDDRGLRLEQPFAIDPIIDGGGSGPKSHLGPVGTRITSGVPGSVQPDNEHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFTDNTTLFLVPLSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSVQQAMHFPSPSTQYVQQIPPSQPEYGSISIKEQPILPMEYNRLLHDDSKRLPKPLHLATSVTPPPHSVPPDYASTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSNVKPPFPSVASNDGNQSHLWKQDQQTAEPPSYHTQQFGSIHNSQYPYPPASSTGHPAQVVSGSSHFHDTASCLQQLGAVSSSTSLTNFIIPSQNGQEAVPPQVGQQYQVEVPHGSEKGYGVVQGTDPSVLYSSKAFQQPNNFIPSSNQVSNAASQQHMNSEPPNQQLQPALCGAGQGNSELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02325 933 CDD SPOC_FPA-like 468 588 - -
Phac5g02325 933 MobiDBLite consensus disorder prediction 711 778 - -
Phac5g02325 933 CDD RRM_SF 97 163 - -
Phac5g02325 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Phac5g02325 933 FunFam flowering time control protein FPA 179 272 - -
Phac5g02325 933 MobiDBLite consensus disorder prediction 856 893 - -
Phac5g02325 933 MobiDBLite consensus disorder prediction 856 888 - -
Phac5g02325 933 CDD RRM_SF 20 86 - -
Phac5g02325 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 252 IPR000504 GO:0003723
Phac5g02325 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Phac5g02325 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Phac5g02325 933 MobiDBLite consensus disorder prediction 351 371 - -
Phac5g02325 933 FunFam Flowering time control protein FPA 10 92 - -
Phac5g02325 933 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Phac5g02325 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Phac5g02325 933 SUPERFAMILY RNA-binding domain, RBD 173 260 IPR035979 GO:0003676
Phac5g02325 933 Gene3D - 3 93 IPR012677 -
Phac5g02325 933 Gene3D - 176 263 IPR012677 -
Phac5g02325 933 SMART rrm1_1 96 163 IPR000504 GO:0003723
Phac5g02325 933 SMART rrm1_1 19 86 IPR000504 GO:0003723
Phac5g02325 933 SMART rrm1_1 187 255 IPR000504 GO:0003723
Phac5g02325 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 259 IPR000504 GO:0003723
Phac5g02325 933 MobiDBLite consensus disorder prediction 651 671 - -
Phac5g02325 933 Gene3D - 94 175 IPR012677 -
Phac5g02325 933 Pfam SPOC domain 463 580 IPR012921 -
Phac5g02325 933 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 88 - -
Phac5g02325 933 MobiDBLite consensus disorder prediction 720 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02325 Phac-Chr5 42043551 42052995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02325 97 254 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 6.76e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02325 - - gmx:100806555 1470.68