Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02322 ATGCCGCCTCCTACAAAATCCCTCGAAAGCGAGGACTGGGGAACCCCAACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCGCCGATTCCGATCTCATGGAACTCTTCGCTCCCTACGGTTCTCTCGATACTCTCATTTCCTATTCCCCACGCACCTTCGCTTACCTCTTGTTTGGACGCGTCGAAGACGCTAAGGCTGCGAAAACCAACTTACAAGGCGCGTTGCTCCGCGGCTTTCAAATCAGAATCGAATTTGCAGTACCGGCAAGACCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACGCTGTACCGTTGGAGGAATTGGAAGCGGAATTTCGTAAATTCGGTAAGGTTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTTTCAATCTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGCGGCCATATTTTTGTAGACTTCCTTAGGTCACAATCGACGAATAGAGATTTTTTGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTGCAATCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCACTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATCTGACACCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGACCTTTACCTGATGGATTAGTTAATGAGCATCCATTTCGACCACCACAAACGGATGTGTTTGGTCAAAATCGTCCTATAGTTCCAAATAATTTTCCCGGGCAATTGCCACCTGGTGGTATTAGTGGACCTAATGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACTCAGGTCCTGATTTTAATGAGATGGGCACACTTCACAAATTTCAAGATGGTAGCTCTAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCACCTCTGGTCCATGGGATGTAATTGACACAAACCAATTTTCAAGAGATTCTAAACGCTCGAGGATAGATGACGCTATGCTTATTGGTGATGCTCCATTTCCTTTAAGAAATATTGATGACCGTGGATTAAGATTAGAACAACCATTTGCAATTGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCAGGAGTTCCTGGTTCTGTCCAACCTGATAATGAACATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGACTGGATATGTTAACGAAACACTATGCTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCCGGTGTTGCCAAGTTTACTGATAACACCACTCTATTTTTGGTACCTCTTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGATTATATGGTGTGGTTCTTAAGTTTCCATTAGTTCCAAGTAGCACATCTGTTCAACAAGCAATGCATTTTCCTTCACCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCTGAGTATGGTTCAATCTCTATAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACCACTTCATCTTGCTACGAGCGTCACTCCTCCACCTCATTCTGTTCCTCCTGATTATGCTTCTACTTATACAGCTTCTGCATCTCAAGCGGGAGTTACACTGACCCCTGAACTTATTGCGACTTTAACTTCCTTTCTGCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACTGTGGTTGGTCCTTCTAATGTGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTGCAGAACCACCTAGTTATCATACTCAACAGTTTGGGAGTATTCATAATTCTCAATATCCTTATCCACCTGCGTCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTTCTCATTTCCATGATACGGCTTCATGTCTTCAGCAGCTAGGTGCTGTTTCATCGTCTACATCCTTGACTAATTTCATTATACCTTCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGTCGGTCAACAGTATCAGGTGGAAGTCCCCCATGGCTCTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCCAAGGCATTCCAACAACCTAATAATTTTATTCCCTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATGTGGAGCTGGCCAGGGAAACTCCGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAGATACAGCAACAGCAAACTCAAGGAGAGCATGGGCCTGGAAATCAGCAATAA 2844 0.4427 MPPPTKSLESEDWGTPTNNLWVGNLPPEVADSDLMELFAPYGSLDTLISYSPRTFAYLLFGRVEDAKAAKTNLQGALLRGFQIRIEFAVPARPCKQLWVGGVSHAVPLEELEAEFRKFGKVEDFKFFRDRRTACVEFFNLDDATRAMKVMNGKRLGGGHIFVDFLRSQSTNRDFLVDQGQFQARPQHLQSSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSTDEARRAKEGLQGRLFNDPRITIMYSSSDLTPGKDYPGFYPGSKGPLPDGLVNEHPFRPPQTDVFGQNRPIVPNNFPGQLPPGGISGPNVPMRPFVPQGLEPLNSGPDFNEMGTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPTSGPWDVIDTNQFSRDSKRSRIDDAMLIGDAPFPLRNIDDRGLRLEQPFAIDPIIDGGGSGPKSHLGPVGTRITSGVPGSVQPDNEHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFTDNTTLFLVPLSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSVQQAMHFPSPSTQYVQQIPPSQPEYGSISIKEQPILPMEYNRLLHDDSKRLPKPLHLATSVTPPPHSVPPDYASTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSNVKPPFPSVASNDGNQSHLWKQDQQTAEPPSYHTQQFGSIHNSQYPYPPASSTGHPAQVVSGSSHFHDTASCLQQLGAVSSSTSLTNFIIPSQNGQEAVPPQVGQQYQVEVPHGSEKGYGVVQGTDPSVLYSSKAFQQPNNFIPSSNQVSNAASQQHMNSEPPNQQLQPALCGAGQGNSELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02322 947 MobiDBLite consensus disorder prediction 365 385 - -
Phac5g02322 947 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Phac5g02322 947 CDD RRM_SF 97 163 - -
Phac5g02322 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Phac5g02322 947 Pfam SPOC domain 477 594 IPR012921 -
Phac5g02322 947 SUPERFAMILY RNA-binding domain, RBD 185 274 IPR035979 GO:0003676
Phac5g02322 947 FunFam Flowering time control protein FPA 10 92 - -
Phac5g02322 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Phac5g02322 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Phac5g02322 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Phac5g02322 947 Gene3D - 94 173 IPR012677 -
Phac5g02322 947 Gene3D - 178 276 IPR012677 -
Phac5g02322 947 SMART rrm1_1 19 86 IPR000504 GO:0003723
Phac5g02322 947 SMART rrm1_1 96 163 IPR000504 GO:0003723
Phac5g02322 947 SMART rrm1_1 201 269 IPR000504 GO:0003723
Phac5g02322 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Phac5g02322 947 CDD RRM_SF 20 86 - -
Phac5g02322 947 MobiDBLite consensus disorder prediction 734 792 - -
Phac5g02322 947 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 104 - -
Phac5g02322 947 Gene3D - 3 93 IPR012677 -
Phac5g02322 947 MobiDBLite consensus disorder prediction 725 792 - -
Phac5g02322 947 CDD SPOC_FPA-like 482 602 - -
Phac5g02322 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Phac5g02322 947 MobiDBLite consensus disorder prediction 665 685 - -
Phac5g02322 947 MobiDBLite consensus disorder prediction 870 902 - -
Phac5g02322 947 FunFam flowering time control protein FPA 193 286 - -
Phac5g02322 947 MobiDBLite consensus disorder prediction 870 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02322 Phac-Chr5 42037959 42052995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02322 19 263 Eukaryotic Initiation Factors Gene Family AT4G34110 25.185 2.00e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02322 - - gmx:100806555 1506.89