Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02309 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCGATTCATTCACCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCTTCAAGTTCTACATGCACCAAAGACAATGAAAATAGTCACTTGGAGCCTCCCAATAGGAATGCACAACAAGTTTCCACCAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACACCCTCTTGGCCTGTTGATGACTTTTTGGAATTAACAGGCTATGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGCAGGTATTTTTGGTGAACAATTTATTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTCACTCATAATAGCAGCAGTGTTGCTTCATACAGAACCTCCAAGTCCTACATGTCACAGAAAAAGCCTAGGATTGAAGTCCTAAATAATGATGATGATGATGAGTACTTCACTGTGCCTGATCTTGGCTAA 723 0.4398 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSPGSLSANHQRFLATGIRVASSSTCTKDNENSHLEPPNRNAQQVSTKVPSQQVPSFTPSWPVDDFLELTGYESPEKKESLQFGELEWLTDAGIFGEQFIQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSQKKPRIEVLNNDDDDEYFTVPDLG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02309 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac5g02309 240 CDD Bbox1_BBX-like 5 47 - -
Phac5g02309 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phac5g02309 240 Gene3D Classic Zinc Finger 1 91 - -
Phac5g02309 240 MobiDBLite consensus disorder prediction 109 144 - -
Phac5g02309 240 MobiDBLite consensus disorder prediction 109 143 - -
Phac5g02309 240 CDD Bbox1_BBX-like 57 98 - -
Phac5g02309 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Phac5g02309 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac5g02309 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phac5g02309 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phac5g02309 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02309 Phac-Chr5 42008388 42011268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02309 1 161 Orphan Transcription Factor Family AT1G06040 62.353 1.17e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac5g02309 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02309 - - vun:114183169 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02309 5 42008388 42011268 Phac5g02309 5 42008388 42011268 ECH