Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02281 ATGGATTATAACATGCAATCTCTTGGTTGTCTTATGGATATGATCACAAGTGCCCTAGTTTCTAATTCAAGACCTATTGTGTTACTGGTGTCTCTTTTTTTTCTGGAATCATGTTATGCCTGTCCGATTGACGGATCCCTGTTTGGATTTCAGCAAAATTTTACCATACTGAGGGAATTGGACATCCGGCAAAGGCAGGAAGATGACATCACAAGAGTATCGGCAGTTCTTTCAATACCGCGGGTTTCTGCGAGCATCCTACTTCGTCACTATAATTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTTCGAAAAACAGTTGGTTTGTTGGATAAGCCAGTTTACCAGTATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTTCACGGGTTAAATCTGCTGCTTGTGGTCATCCCTACTGCTATTTGTGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGGGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTTTTGGCATCAGATGAAGATAAAGTGAAGTATGACCGTTACCTTCTTAGGTCCTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAGTACGCAGTTACTTTTGATGCTGGAAGCGGAAATTATGATGTATCTTGCCTTTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGCCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAATAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCTAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACTTGTACGCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACGGGTGGCTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCGCAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATTGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGTTATTCCTAAATGCCGATGGCCCATCCAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTGGAGAATGGTTTATCTGATGTGGACAGTAATGGGGCTGCTTCGAGCAAAGCAACGAGTTCCAAAAATGGAGCAGGGAGCAGCAAGGGGAGAGGAGGAAGAGGAAAAACAACTATTCGAACTAGCATAACTGGCAGAATGACTAATGACAATCATTGGTCTTGTGAACATTGTACCTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGGCGATGA 1749 0.4334 MDYNMQSLGCLMDMITSALVSNSRPIVLLVSLFFLESCYACPIDGSLFGFQQNFTILRELDIRQRQEDDITRVSAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLDKPVYQYSNARELTCGICFEMYPRSRVKSAACGHPYCYLCWAGYIGTSINDGPGCLGLRCPDPTCGAAIGQDMINLLASDEDKVKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNGAGSSKGRGGRGKTTIRTSITGRMTNDNHWSCEHCTYANVRSATTCQMCNQQRR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02281 582 ProSiteProfiles Zinc finger RING-type profile. 131 177 IPR001841 -
Phac5g02281 582 ProSiteProfiles TRIAD supradomain profile. 127 340 IPR044066 -
Phac5g02281 582 Gene3D - 258 513 - -
Phac5g02281 582 SMART zf_4 556 580 IPR001876 -
Phac5g02281 582 CDD BRcat_RBR_ANKIB1 207 271 - -
Phac5g02281 582 Pfam IBR domain, a half RING-finger domain 201 262 IPR002867 GO:0008270
Phac5g02281 582 Pfam IBR domain, a half RING-finger domain 279 327 IPR002867 GO:0008270
Phac5g02281 582 SUPERFAMILY RING/U-box 127 212 - -
Phac5g02281 582 MobiDBLite consensus disorder prediction 514 532 - -
Phac5g02281 582 Pfam Ariadne domain 349 510 IPR045840 -
Phac5g02281 582 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 428 IPR031127 GO:0004842|GO:0016567
Phac5g02281 582 FunFam RBR-type E3 ubiquitin transferase 125 214 - -
Phac5g02281 582 CDD Rcat_RBR_ARI7-like 285 339 - -
Phac5g02281 582 FunFam RBR-type E3 ubiquitin transferase 263 513 - -
Phac5g02281 582 SUPERFAMILY RING/U-box 281 329 - -
Phac5g02281 582 SUPERFAMILY Ran binding protein zinc finger-like 554 581 IPR036443 -
Phac5g02281 582 ProSiteProfiles Zinc finger RanBP2 type profile. 554 582 IPR001876 -
Phac5g02281 582 MobiDBLite consensus disorder prediction 514 548 - -
Phac5g02281 582 SMART ibrneu5 200 262 IPR002867 GO:0008270
Phac5g02281 582 SMART ibrneu5 275 336 IPR002867 GO:0008270
Phac5g02281 582 SUPERFAMILY RING/U-box 201 269 - -
Phac5g02281 582 ProSitePatterns Zinc finger RanBP2-type signature. 558 577 IPR001876 -
Phac5g02281 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 212 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02281 Phac-Chr5 41915515 41922857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02281 51 581 ARIADNE family AT1G65430 73.070 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02281 K11968 - gmx:100810427 1035.4