Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02240 ATGGAGGTCCGTTACAATAACATCTGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGCGCTTCACTTACTCAGGAGAGTTTATACCCTTCAAGTTCAACTACAAACTTTTACAAATCTGGGCTATCTGAACCAGGTAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATTATGAACAATTGATGGATCAGTATAGAAGGCACTCGGAAAACTCTGCAACAATCAATGAACAGATCACAACAGTATGTATAGAAAGGGAAGAAGGAGTAAACAATGTCACACTAGACAGTTCTATTGAATGTCCACGAAGGCATCATAATGATTTCAATGATTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGAGTCGTGGTCTCTCCCAAGAACAAATCTCATTGATTCCAGTATCAAAGTACAAGTGTGGCCGCTTCTTTTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTTATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCGATGTGTTACAGGGAGGTGATTGTGGACGTGTCAAAACACAAATAA 696 0.4009 MEVRYNNICYPYSTAGSFIEYVEGLTYEHVNFIFSGASLTQESLYPSSSTTNFYKSGLSEPGSTSYYQDSNGYEVNYYEQLMDQYRRHSENSATINEQITTVCIEREEGVNNVTLDSSIECPRRHHNDFNDYEELLELGETVGTESRGLSQEQISLIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVIVDVSKHK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02240 231 FunFam E3 ubiquitin ligase BIG BROTHER 139 224 - -
Phac5g02240 231 SUPERFAMILY RING/U-box 176 226 - -
Phac5g02240 231 Pfam Ring finger domain 178 219 IPR001841 -
Phac5g02240 231 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Phac5g02240 231 Coils Coil 78 98 - -
Phac5g02240 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 224 IPR033276 GO:0004842|GO:0016567|GO:0046621
Phac5g02240 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 224 IPR013083 -
Phac5g02240 231 SMART ring_2 179 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02240 Phac-Chr5 41547559 41551114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02240 2 230 C3H Transcription Factor Family AT3G63530 37.037 2.22e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02240 K19045 - gmx:100793907 336.265