Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02239 ATGGAGGTCCGTTACAATAACATCTGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGCGCTTCACTTACTCAGGAGAGTTTATACCCTTCAAGTTCAACTACAAACTTTTACAAATCTGGGCTATCTGAACCAGGTAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATTATGAACAATTGATGGATCAGTATAGAAGGCACTCGGAAAACTCTGCAACAATCAATGAACAGATCACAACAGTATGTATAGAAAGGGAAGAAGGAGTAAACAATGTCACACTAGACAGTTCTATTGAATGTCCACGAAGGCATCATAATGATTTCAATGATTATGAGGTCAGTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGAGTCGTGGTCTCTCCCAAGAACAAATCTCATTGATTCCAGTATCAAAGTACAAGTGTGGCCGCTTCTTTTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTTATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCGATGTGTTACAGGGAGGTGATTGTGGACGTGTCAAAACACAAATAA 741 0.4022 MEVRYNNICYPYSTAGSFIEYVEGLTYEHVNFIFSGASLTQESLYPSSSTTNFYKSGLSEPGSTSYYQDSNGYEVNYYEQLMDQYRRHSENSATINEQITTVCIEREEGVNNVTLDSSIECPRRHHNDFNDYEVSWEDNIDPDNMTYEELLELGETVGTESRGLSQEQISLIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVIVDVSKHK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02239 246 SUPERFAMILY RING/U-box 193 241 - -
Phac5g02239 246 FunFam E3 ubiquitin ligase BIG BROTHER 154 239 - -
Phac5g02239 246 SMART ring_2 194 234 IPR001841 -
Phac5g02239 246 Coils Coil 78 98 - -
Phac5g02239 246 Pfam Ring finger domain 193 234 IPR001841 -
Phac5g02239 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 239 IPR033276 GO:0004842|GO:0016567|GO:0046621
Phac5g02239 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 239 IPR013083 -
Phac5g02239 246 ProSiteProfiles Zinc finger RING-type profile. 194 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02239 Phac-Chr5 41547559 41551114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02239 2 245 C3H Transcription Factor Family AT3G63530 39.184 4.77e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02239 K19045 - gmx:100793907 375.17