Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02234 ATGGCGGCGGCGGCGGCGGCGGCGTCGCAGGGGTACCACCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCGTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTCCTCTCCATCAAAATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGCGTCAGCGGAGCGCGTGCTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAGACCTTCAGGCTGAATTGGGCCTCCTTCGGCATCGGCGAGCGCAGGCCCGATGCGGGCCCAGAGCACTCAATCTTTGTGGGCGATCTTGCGCCTGAGGTAACCGACTACCTTCTCCAAGAAACCTTCCGGGCCCATTACCCCTCCGTTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAGTTCTCCGACGAGAGCGAACGTAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACCAGAGCCATGCGCATTAGCGCCGCCACACCCAAGAAGACCACCGCTTCTTACGCAGCGCCCGCGCCTGTACCCAAACCGACGTACCAGATGCCGGCGTACACTGCGCCGGTTCAAGTTCAACAACCGGAGTATGATGCTAATAACACTACCGTTTTTGTTGGTAGTTTAGATCTTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTCTCTGTTAAAATTCAGGCTGGCAAGGGATGTGGCTTTGTTCAATTTGGGACTAGAGCATCTGCTGAGGAAGCTATTCAGAAAATGCAGGGAAAGATGATAGGCCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTACCTGGTGGCTGGGGACAACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCATATGCTTATGGGGCTGCTCAAGATCCTTCATCTTATGGATATGGTGCATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGCTCAAGACCCAACAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCATTGGCAATGCCAGATGTTGACAAGTTAAATGCTGCATACCTCTCAGTACATGGCAATGCTATTTTAGGGCGATCGCTATGGCAAAAATCCTGTTCATCATCATCCTTACAACAAAATTAA 1281 0.5301 MAAAAAAASQGYHQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHASAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPEVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMTEMNGVYCSTRAMRISAATPKKTTASYAAPAPVPKPTYQMPAYTAPVQVQQPEYDANNTTVFVGSLDLNVSEEELKQNFLQFGEIVSVKIQAGKGCGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLAARQDLPGGWGQQMDPSQWSAYYGYGQGYEAYAYGAAQDPSSYGYGAYAGYAQYPQQVEGAQDPTAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWQKSCSSSSLQQN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02234 426 SMART rrm1_1 116 190 IPR000504 GO:0003723
Phac5g02234 426 SMART rrm1_1 23 98 IPR000504 GO:0003723
Phac5g02234 426 SMART rrm1_1 234 301 IPR000504 GO:0003723
Phac5g02234 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 298 IPR000504 GO:0003723
Phac5g02234 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 181 IPR000504 GO:0003723
Phac5g02234 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
Phac5g02234 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 305 IPR000504 GO:0003723
Phac5g02234 426 CDD RRM1_SECp43_like 23 103 - -
Phac5g02234 426 FunFam Polyadenylate-binding protein RBP47B 103 204 - -
Phac5g02234 426 Gene3D - 103 203 IPR012677 -
Phac5g02234 426 SUPERFAMILY RNA-binding domain, RBD 21 196 IPR035979 GO:0003676
Phac5g02234 426 FunFam polyadenylate-binding protein RBP45 216 312 - -
Phac5g02234 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 102 IPR000504 GO:0003723
Phac5g02234 426 SUPERFAMILY RNA-binding domain, RBD 211 334 IPR035979 GO:0003676
Phac5g02234 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
Phac5g02234 426 FunFam Polyadenylate-binding protein RBP47B 21 101 - -
Phac5g02234 426 CDD RRM2_SECp43_like 114 193 - -
Phac5g02234 426 Gene3D - 21 101 IPR012677 -
Phac5g02234 426 Gene3D - 217 310 IPR012677 -
Phac5g02234 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02234 Phac-Chr5 41507395 41510622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02234 116 300 Eukaryotic Initiation Factors Gene Family AT4G34110 27.692 2.69e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02234 - - gmx:100799421 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02234 5 41507395 41510622 Phac5g02234 5 41507395 41510622 ECH