Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02209 ATGAGCTCCGACGCCACGTCGTATTGGTGCTACAGCTGCACGCGCTTCGTGCACATCCAGGAGCACCACGACGTCGTTTGCCCGCGCTGCCAGGGCGGTTTCGTCGAGAAGGTCCAGGCCGGCCACTCGCCGGCAGTTTCCCTCATCGCTGACGGCGCCTCCAGAAGGCAGGGGTTCCGCCGCCGCCACCGCAACGCCGGGAGTCACTCGCCGTTCAACCCGGTCATCGTGCTCCGGGGACCGGGGGAGGACGAGGAGAGCAGTTTTGAGTTATACTACGACGGCGACGACGGCGCGGGTCTCCGGCCACTGCCCTCGACGATGTCGGAGTTTTTGCTTGGATCGGGTTTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAATCCGCCGGCGTCAAAGGCGGCGATAGAGTCAATGCCGACGGTGCAAATCACTGAGTCTCAGGTCGCGACAGAGACGCACTGCGCCGTGTGCAAAGAGCCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGTTACCGTCGGAGCAAACGCCTTCGGAGAGCAGAGTTGCCGGCCAGATCGAGGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCCGGCGGCGGATTCGCCGTGGGTAGGTTCGCTGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGTGGAAATTCGAGCGAAGGTTCTAGAAGAATTTCTCTGTCGGTTGGAAGCGCCAGAGTTAGGGAAAGTCGTGGTGGATTTGGCAGAATGTTCCGGAATTGGTTTGGGAGAATTGGGGCTTTAACTAGAAGTCGTAGCCTTTCAACTTCGCTCTTCAATAGAAGACGAAGTAGCACGAGAACCTGGGTTTTGGAAAATTGA 981 0.5994 MSSDATSYWCYSCTRFVHIQEHHDVVCPRCQGGFVEKVQAGHSPAVSLIADGASRRQGFRRRHRNAGSHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQITESQVATETHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQTPSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSSEGSRRISLSVGSARVRESRGGFGRMFRNWFGRIGALTRSRSLSTSLFNRRRSSTRTWVLEN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02209 326 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Phac5g02209 326 CDD RING-H2_RNF126-like 164 205 - -
Phac5g02209 326 SUPERFAMILY RING/U-box 144 210 - -
Phac5g02209 326 Pfam Protein of unknown function (DUF1117) 228 316 IPR010543 -
Phac5g02209 326 FunFam E3 ubiquitin-protein ligase RING1-like 126 211 - -
Phac5g02209 326 Pfam Ring finger domain 163 205 IPR001841 -
Phac5g02209 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Phac5g02209 326 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Phac5g02209 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 209 - -
Phac5g02209 326 SMART ring_2 164 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02209 Phac-Chr5 41399409 41400389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02209 93 216 C3H Transcription Factor Family AT5G01980 40.323 5.07e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02209 K11982 - gmx:100784822 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02209 5 41399409 41400389 Phac5g02209 5 41399409 41400389 ECH
Phac5g02209 5 41399409 41400389 Phac11g00945 11 6127343 6129541 PCT