LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g02180	ATGGAACTTTTGAAACCTCTGCACCCTCCCCATGCACCCAATTTGTGCCTTCCCTTCCACGGCCACCCCTCTTCTTCTCAATCTCAATCTCAATCTCACCTTCCCCTCCCCATGCCTCGCAAGGTTCATGTCGCTGTTGGCAAATCGATTGATAAAGCTGTCACCTTGCTTCAATGGACCTTCAACCACTTTCACAACGCTGAAATCGTTATATTACATGCTTATCAACCTTCTCTCACCATCCCCACCCTCTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGAAGTGTGGAGAGAGAACAGACCATGAAGCTTTTAGACAAGTACTTGATCATTTGCCGCACAGCTAGGGTTCAGGCAAGCATTATAGTTACTGAGGCTGATCAAGTCCAAAAAGGAATTGTTGATTTGGTCGTTAAGCATAGTATTCAGAAGCTTGTAATTGGAGCAGTGCCAGAAAATTGCATGAAAGTGAAAAGGAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCATTCTGTGAAGTATGGTTTATCTATAAAGGAAAAGTTATTTGGACACGAGAGGCTTCTGAGACACCATGTTCTTCATCCTCGTGTGCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAACTATTTGACTCGGAATGTCTTCAACCAAATTCGGCAAGATCTGCTACTGGTTTTGGAATTAGAAGTTGTGTTCATGAGGAAATCACAGAAACGGAAGCCACTTTTTCATCCAAAGCATCCAGTTGTGGCAGTCATTGTTCCTCCCAAAATTCTTCTAGGGCTCATTTAGATACGTACTTAGAGGCCATGGAAGAAAAAATTAACAAACAACTTATTGAAACCAAGATAGAAGCCGAGGCAGTATCAGATGAAGCCTTTGCTAACCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGAATCTGCCCATGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTGACAGCTGCGGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTAGTGAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCATGCTCAGGAAGCAAACCGTAGGCGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGAGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTCCAGAAGAATTACCTGAGTTAGCAGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTACTATAAAAAAGTTCCATCAACATAACATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCACTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCTCCTTTGACATGGAATACCCGAGCGCGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATTTGAAGCCAGAAACTGTACTACTTGATTCCTCACTTGGTTGCAAGATATGTGGATTTGGGTTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACGGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATCTACTCCTTTGGGCTCATCATTTTGCAACTCCTCACTGGTAAAACTCCAGTTGGGTTAGCAGCTCTTGTACGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCGCCTGTGGCATCGCGATTGGTTGAACTAGGATTGCAGTTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACTCCTACACTTGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTATGTCCAATACTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCTGACGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGGCATGACACTTCTCCCATGACTAATTTGAAATTGAATCACCTGTTTCTAACTCCCAACCACGCACTACGACTTGCCATCCATGACTGGCTTTGCAAATCTTGA	2466	0.4327	MELLKPLHPPHAPNLCLPFHGHPSSSQSQSQSHLPLPMPRKVHVAVGKSIDKAVTLLQWTFNHFHNAEIVILHAYQPSLTIPTLLGKLPASQASPAVVSAFRSVEREQTMKLLDKYLIICRTARVQASIIVTEADQVQKGIVDLVVKHSIQKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFIYKGKVIWTREASETPCSSSSCAQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGIRSCVHEEITETEATFSSKASSCGSHCSSQNSSRAHLDTYLEAMEEKINKQLIETKIEAEAVSDEAFANLLKCERLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALTAAVQEQQKLLNESEEIASELQMTMRNIALLDSHAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSSSDLQNATCNFSNSFKIVQGGFGCIYKGEMLGRTVTIKKFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGKTPVGLAALVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIHDWLCKS*	822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g02180	821	Gene3D	Transferase(Phosphotransferase) domain 1	550	751	-	-
	Phac5g02180	821	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	752	821	IPR013083	-
	Phac5g02180	821	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	38	159	-	-
	Phac5g02180	821	Coils	Coil	351	382	-	-
	Phac5g02180	821	Pfam	U-box domain	751	820	IPR003613	GO:0004842\|GO:0016567
	Phac5g02180	821	Pfam	Protein tyrosine and serine/threonine kinase	482	733	IPR001245	GO:0004672\|GO:0006468
	Phac5g02180	821	PANTHER	OS02G0152300 PROTEIN	42	815	-	-
	Phac5g02180	821	MobiDBLite	consensus disorder prediction	20	35	-	-
	Phac5g02180	821	SUPERFAMILY	Protein kinase-like (PK-like)	460	739	IPR011009	-
	Phac5g02180	821	SUPERFAMILY	RING/U-box	741	820	-	-
	Phac5g02180	821	CDD	RING-Ubox_WDSUB1-like	752	807	-	-
	Phac5g02180	821	Gene3D	HUPs	38	158	IPR014729	-
	Phac5g02180	821	SMART	Ubox_2	754	817	IPR003613	GO:0004842\|GO:0016567
	Phac5g02180	821	CDD	STK_N	41	191	-	-
	Phac5g02180	821	ProSiteProfiles	Protein kinase domain profile.	477	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g02180	821	MobiDBLite	consensus disorder prediction	15	35	-	-
	Phac5g02180	821	Coils	Coil	386	413	-	-
	Phac5g02180	821	Gene3D	Phosphorylase Kinase; domain 1	455	549	-	-
	Phac5g02180	821	ProSiteProfiles	U-box domain profile.	750	821	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g02180	Phac-Chr5	41167505	41171615	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g02180	41	818	U-box Gene Family	AT2G45910	36.125	1.20e-166	502

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Phac5g02180		PK_Tyr_Ser-Thr	9.9e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g02180	-		-	gmx:100788846	1442.94