Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02158 ATGTCTGCCGCCCTGGATATGACGCTCGACGATATTATCAAAAACAACAAGAAGTCCGCCTCCGCCAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGCCGTCTTCCCAACCGTGCCGGAAATCGCCCCGCGCCGTACGCAGCAGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGGCCGTCGCCACGCCTTTCGCAGGTCAAGGTGGTCGGGCCTCTTCTATCGAAACAGGGACGAAGCTTTATATATCTAATCTGGATTATGGGGTTTCCAATGACGATATTAAGGAGTTATTTCTTGAAGTTGGTGACCTGAAACGGCACACTGTTCACTACGACAGGAGTGGAAGATCGAAGGGTACAGCGGAAGTAGTCTTCTCTCGAAGAGCTGATGCCGTAGCTGCAGTGAAGAGGTACCACAATGTTCAGCTAGATGGGAAACCAATGAAGGTAGAGATTGTGGGGACAAATATTGCTACACATGCTGCAGTGCCTACTGTCAATGGAACTTTTGGAAATTCTGGAGGACCTCCCAGAAGTGGACAAGGGAGAAGTGGGCTACTAGGAAGGCCACGTGGTGCACCTAGAGGGCGAGGTAGCAGTCGGAGGGGTCGAGGACGTGGTAGAGATCGTGACGAAAAGGTATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 735 0.532 MSAALDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAGNRPAPYAAAKAPESAWQHDMYADQAVATPFAGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAVPTVNGTFGNSGGPPRSGQGRSGLLGRPRGAPRGRGSSRRGRGRGRDRDEKVSAEDLDAELEKYHAEAMQLN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02158 244 SUPERFAMILY RNA-binding domain, RBD 33 162 IPR035979 GO:0003676
Phac5g02158 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Phac5g02158 244 MobiDBLite consensus disorder prediction 175 244 - -
Phac5g02158 244 Gene3D - 75 227 IPR012677 -
Phac5g02158 244 CDD RRM_THOC4 88 162 - -
Phac5g02158 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Phac5g02158 244 SMART FoP_duplication_2 176 244 IPR025715 -
Phac5g02158 244 MobiDBLite consensus disorder prediction 16 50 - -
Phac5g02158 244 SMART rrm1_1 89 161 IPR000504 GO:0003723
Phac5g02158 244 MobiDBLite consensus disorder prediction 214 237 - -
Phac5g02158 244 FunFam THO complex subunit 4 81 226 - -
Phac5g02158 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 242 - -
Phac5g02158 244 MobiDBLite consensus disorder prediction 175 189 - -
Phac5g02158 244 Pfam C-terminal duplication domain of Friend of PRMT1 182 238 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02158 Phac-Chr5 41029518 41033466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02158 67 162 Eukaryotic Initiation Factors Gene Family AT2G36660 27.083 8.00e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02158 K12881 - gmx:100783362 327.405