Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02152 ATGGGGCGAAATCTCTTTGTTTCGAGATTATCCTTTTACACTACACAGGACCAGCTGAAGAAGTTGTTTGCTCCATTCGGACTAGTTACCAGGGTTAATCTCGTGGTCGATCCTAGAACTAAAAGGCCCAAAGGGTTTGCGTTTGTCTCCTACGAGTCTCAAATTGAAGCGGAAAAGGCTATGAAAGCCATGAATGGCAGGGTAATTTTGCCCTATCTGTATCCACTTTAA 231 0.4372 MGRNLFVSRLSFYTTQDQLKKLFAPFGLVTRVNLVVDPRTKRPKGFAFVSYESQIEAEKAMKAMNGRVILPYLYPL* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02152 76 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 69 IPR000504 GO:0003723
Phac5g02152 76 SMART rrm1_1 4 72 IPR000504 GO:0003723
Phac5g02152 76 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 69 - -
Phac5g02152 76 SUPERFAMILY RNA-binding domain, RBD 3 69 IPR035979 GO:0003676
Phac5g02152 76 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 76 IPR000504 GO:0003723
Phac5g02152 76 Gene3D - 1 71 IPR012677 -
Phac5g02152 76 CDD RRM_SF 5 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02152 Phac-Chr5 40987857 40990182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02152 2 70 Eukaryotic Initiation Factors Gene Family AT1G49760 37.681 4.40e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02152 - K13195 pvu:PHAVU_005G141700g 133.65