Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02149 ATGAAGAGAAGCAGAGAAGAGGGTGAGTTAGAGAACATGGCTAACTGTTTGATGCTGTTGACCAAAGTTGGTGTGAGTGAAACCAACCCAACATCAAAGGGCTGTGGAGAGTTAAGAGACAGTGATGTTGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGACACAGAGCAAGTCACAAGAAACCAAGGCTTATGATCACAGATCTTTCGTGCCACCATCACACGTTACCTAGTCCAACCACGAAACAGCAACCTAGGATGCACCCGTGTCCCATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAACTGCCATTAATGGTGGTTTGTTGAATCGTAGAGATTCGGATTCTTTGTCCATTCTGAAGAAATCTAAAGATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTAAGAACACCTGTTCTCGATTGCTTCATTTGA 534 0.4363 MKRSREEGELENMANCLMLLTKVGVSETNPTSKGCGELRDSDVGDFKCKTCNRRFSSFQALGGHRASHKKPRLMITDLSCHHHTLPSPTTKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAINGGLLNRRDSDSLSILKKSKDGGRLNLCLDLNLMPLEDDDLKLNLRTPVLDCFI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02149 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Phac5g02149 177 SMART c2h2final6 97 119 IPR013087 -
Phac5g02149 177 SMART c2h2final6 46 68 IPR013087 -
Phac5g02149 177 Gene3D Classic Zinc Finger 43 119 - -
Phac5g02149 177 PANTHER ZINC FINGER PROTEIN ZAT5 6 162 - -
Phac5g02149 177 Pfam C2H2-type zinc finger 46 71 - -
Phac5g02149 177 Pfam C2H2-type zinc finger 97 121 - -
Phac5g02149 177 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Phac5g02149 177 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Phac5g02149 177 SUPERFAMILY beta-beta-alpha zinc fingers 46 119 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02149 Phac-Chr5 40971326 40972358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02149 1 168 C2H2 Transcription Factor Family AT2G28710 48.538 1.01e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g02149 zf-C2H2_6 3.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02149 - - vra:106758971 276.174