Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02048 ATGGAAATTGATCTGAACCATGCAGTGATTGAGGCTGAGAAGAGCGCGTCTTGCAATGGTGAGTGTGGGAAAGGAGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCAAGTGTGTCCTCTTCTTATCTTGAACTCTGGCACGCTTGTGCTGGCCCTCTCACTTCCCTCCCAAAGAAAGGAAATGTGGTGGTGTATTTTCCCCAAGGGCACTTAGAACAAGCTTCATCTTTCGCTCCCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCAGATGAAGAGGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGATACCAGCACTCATGGGGGGTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAAGACCTGCATGGTGTGCAGTGGAAATTTCGACATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTTCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATAAGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCGCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTTCCCTACCAAAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCGGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAACTAGTGATCTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCTCCTTGGGAGATTGATCCTTCTGCGTCTCTTCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGGTGCCTCACCCAGTCATCTCATCACTGCAGGGGGCAGTGGGTTTATGGACTCTGAGGAGTCCGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATTCAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAACAAGTCATCCAAATTTTGCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTGGTGAAACTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAATTGAGATCGGTGACAGGAAAGGTAGATTTGAACTTTGGTGCCTGGGGAAAACCCAGTTTGAGTTGCACAAATTACAACCTGCGACAGGCAACCATACCTAACTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGTTAGCGGCACCGGCATGATGTGCTCCAAAACCACCAATTTCCAAGGAGACAATGTCCCATTTAACTCTCCTCCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCAGATGTCACAATCCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTACTGCTTCCTTAGGGGCGAACATGAGGATTCCAAATGATGACAATTTCAACGGGAAGGTAAAGGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCGAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAAGAAGGGATGGAGAATCCTGTACACTGACAGTGAAAATGACATTATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATACATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATAGAAGCTTCTAAGTCTTCCTCCGTGGGCCAGCCAGATTCTTCTCCAACAGTGGTTAGAATATAG 2430 0.4432 MEIDLNHAVIEAEKSASCNGECGKGAACVCSLSSPTCSSSGSSSASVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFAPFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVQWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCTSGIVTGTSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITAGGSGFMDSEESVRSSKVLQGQENSSFMSLYYGCDTVTKQPEFEIRSPTSHPNFASTGVRKIAAGEFMRVHPSSYAGFGETNRFPRVLQSQEICQLRSVTGKVDLNFGAWGKPSLSCTNYNLRQATIPNFHSLGPEVIQTAYFPYGDIHKAGQVSGTGMMCSKTTNFQGDNVPFNSPPSQSGIMRNEVGRSDVTIPNEQKLQDNISGTASLGANMRIPNDDNFNGKVKACKLFGFPLSGEATTQNLQQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPKKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMINDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02048 809 FunFam Auxin response factor 328 401 - -
Phac5g02048 809 CDD B3_DNA 163 265 IPR003340 GO:0003677
Phac5g02048 809 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Phac5g02048 809 Gene3D - 163 267 IPR015300 -
Phac5g02048 809 FunFam Auxin response factor 676 770 - -
Phac5g02048 809 SUPERFAMILY CAD & PB1 domains 683 760 - -
Phac5g02048 809 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 770 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac5g02048 809 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Phac5g02048 809 FunFam Auxin response factor 163 267 - -
Phac5g02048 809 MobiDBLite consensus disorder prediction 414 434 - -
Phac5g02048 809 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
Phac5g02048 809 SMART B3_2 165 267 IPR003340 GO:0003677
Phac5g02048 809 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac5g02048 809 Pfam AUX/IAA family 675 765 IPR033389 -
Phac5g02048 809 ProSiteProfiles PB1 domain profile. 681 763 IPR000270 GO:0005515
Phac5g02048 809 Gene3D - 677 770 - -
Phac5g02048 809 Gene3D - 329 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02048 Phac-Chr5 40355269 40362807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02048 45 809 B3 DNA Binding Superfamily AT5G60450 59.974 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac5g02048 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02048 - - gmx:100812909 1420.99