Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02036 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCGGAGATTCCTCGGTTCAAGTCCATGACCCAAACTCAAACCCTAATCCTAACCCTAATCCAAACTCATCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGCTTTCAGCGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATTTGCCGTGGAAGCTGCGGCAGAGGACGAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCCTGGGAGACCTCACTGGGATAAAAAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACGATATTCTCCAGGAAGGACAGCTTTGTAACACATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTACGAGACTTCCGGCAGTTTTATCAAACCACCTTGGAAACGATATTTTGATGAACGCTCAAGGCCCGAGGGTAATGCCTCAGGGTCTACAATTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTCCAGAATCATACATGGGGAATTTTGCTGATGCTGAACATGTTGAACATAAGCTAAGGTTGCCGTTATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCAGGCAACTCAAGTGTATTCTCACCAGGAGCAACCTTGCCTGAAACAAACAACATTTTCGGGACATCGTCGTCACAGGCACAGTGGGCGAATTACCGATACCCAGAAGCATCTTTTGCATGTGCCAGTGTTTCTATGCCTCATGGACTGAAGCTAGAGCAAGAAGACAACAAAGGGGAGTTGTCGCATTGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGTACTTCACCCTTCGACAACTCTAACTTCGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAACCGGAGCAACGTGGTTGAAATTCAGAAGATATTCAAGCAAGGAAACCAGCCTGAAAACTTCAATCTCATGGTGAATTCCCAGGCAAGCAGAGGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCGCAGATCGAAGAGTGGGGAAGTGGAGAAGTAGAAATAACGGAGAAGCAAGTACGTTCAAGTTCAAACACTGAAGAGCACTTAACCAAAGACTTCATGGGTGTTGGAGATGGGTCTCTAAGCAGGCAAATGGGGCCAGTGATGAACCTGCAAAGGCAGTTCCGTGGACACTACTGA 1458 0.4829 MMSGEAITVPSNLGDSSVQVHDPNSNPNPNPNPNSSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSTRLPAVLSNHLGNDILMNAQGPRVMPQGLQLHGFHSEFGGPGPESYMGNFADAEHVEHKLRLPLWLDQTNLQLNHPLGVVPGNSSVFSPGATLPETNNIFGTSSSQAQWANYRYPEASFACASVSMPHGLKLEQEDNKGELSHCVSSLYPSHMESTRMSGTSPFDNSNFGLLDPNMSSTSTNNRSNVVEIQKIFKQGNQPENFNLMVNSQASRGGFSLSCRKSLEHMVMPQIEEWGSGEVEITEKQVRSSSNTEEHLTKDFMGVGDGSLSRQMGPVMNLQRQFRGHY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02036 485 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Phac5g02036 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 469 IPR031140 -
Phac5g02036 485 SMART c2h2final6 108 138 IPR013087 -
Phac5g02036 485 SMART c2h2final6 143 163 IPR013087 -
Phac5g02036 485 SMART c2h2final6 67 89 IPR013087 -
Phac5g02036 485 Gene3D Classic Zinc Finger 122 200 - -
Phac5g02036 485 FunFam protein indeterminate-domain 12-like 46 114 - -
Phac5g02036 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Phac5g02036 485 MobiDBLite consensus disorder prediction 1 41 - -
Phac5g02036 485 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Phac5g02036 485 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Phac5g02036 485 MobiDBLite consensus disorder prediction 1 51 - -
Phac5g02036 485 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Phac5g02036 485 Gene3D Classic Zinc Finger 46 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02036 Phac-Chr5 40287188 40290063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02036 14 200 IDZ Gene Family AT3G50700 77.005 4.61e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g02036 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02036 K25870 - gmx:100811687 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02036 5 40287188 40290063 Phac5g02036 5 40287188 40290063 ECH
Phac5g02036 5 40287188 40290063 Phac11g01136 11 7646243 7649774 PCT