Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02021 ATGAGTGCTCAACAAAAAGAAACGGAAAAACATGACACGCTTTCGTCGAATCCAACGGTGGATGATACAATGGGTGTAACCGATGAAACCTCGCATGTAAACAATGAGTGGAAGCCAGAGAAAATTCAGTTCGAAATACCGACCAGAACATCAGAAGACTCTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCATAAGAGAGTGAATTTTCTTGTCACTTCTCGCTCTGTTGATGCTCCTAGACCTTCTTCTTCTTCAGCTCCCAGAGGCAAATCATCCATGAGGAACATCTTACCAAGATTCGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGTTTCAGAAGCTTCTTTTTCAGGTCATCAAGAAAAGTCCTCAATCTCCAGATCAGTGTCTCTCACCAAGATATTCACTCATAAGATTAACAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGGTGGAACTCTTGGTGCTTCTCCATGCGGAAGAGAAACTCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCAAGTACATGAAGTGAATGAATCAACAAAGGATACTGGCTTAGAAAATGGTGGTGGTGAAGATATTGGTGAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCAGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTGATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACGTCAACGACCATGGTGACGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCCCATATATTTTACCCCCTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGCTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGATGGCTAGCTTTATCAGAGCAGCAGCGTGGTTCTTCAGCGTGA 1380 0.4486 MSAQQKETEKHDTLSSNPTVDDTMGVTDETSHVNNEWKPEKIQFEIPTRTSEDSCRDFVGIRMPLTPSPTPSHKRVNFLVTSRSVDAPRPSSSSAPRGKSSMRNILPRFGFKNRQSLDVEKAVTAVSEASFSGHQEKSSISRSVSLTKIFTHKINRTSSLPVEEIGRANVESALGGTLGASPCGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPQVHEVNESTKDTGLENGGGEDIGEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVQNLPVTLLRIRSVQTQNTGARSEQGDEYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFVSLPFSCVLGLLSSVTSTTMVTSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWLALSEQQRGSSA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02021 459 CDD RING_CH-C4HC3_MARCH 249 297 - -
Phac5g02021 459 SMART ringv_2 248 297 IPR011016 GO:0008270
Phac5g02021 459 MobiDBLite consensus disorder prediction 82 100 - -
Phac5g02021 459 MobiDBLite consensus disorder prediction 17 32 - -
Phac5g02021 459 MobiDBLite consensus disorder prediction 1 16 - -
Phac5g02021 459 SUPERFAMILY RING/U-box 245 300 - -
Phac5g02021 459 MobiDBLite consensus disorder prediction 82 103 - -
Phac5g02021 459 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Phac5g02021 459 MobiDBLite consensus disorder prediction 1 46 - -
Phac5g02021 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 304 IPR013083 -
Phac5g02021 459 PANTHER OS02G0165000 PROTEIN 4 457 - -
Phac5g02021 459 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02021 Phac-Chr5 40149706 40154227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02021 246 303 C3H Transcription Factor Family AT2G37950 45.763 2.01e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02021 - - gmx:100782610 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02021 5 40149706 40154227 Phac5g02021 5 40149706 40154227 ECH
Phac5g02021 5 40149706 40154227 Phac11g01168 11 7928328 7934916 PCT