Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02020 ATGGGTGTAACCGATGAAACCTCGCATGTAAACAATGAGTGGAAGCCAGAGAAAATTCAGTTCGAAATACCGACCAGAACATCAGAAGACTCTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCATAAGAGAGTGAATTTTCTTGTCACTTCTCGCTCTGTTGATGCTCCTAGACCTTCTTCTTCTTCAGCTCCCAGAGGCAAATCATCCATGAGGAACATCTTACCAAGATTCGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGTTTCAGAAGCTTCTTTTTCAGGTCATCAAGAAAAGTCCTCAATCTCCAGATCAGTGTCTCTCACCAAGATATTCACTCATAAGATTAACAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGGTGGAACTCTTGGTGCTTCTCCATGCGGAAGAGAAACTCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCAAGTACATGAAGTGAATGAATCAACAAAGGATACTGGCTTAGAAAATGGTGGTGGTGAAGATATTGGTGAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCAGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTGATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACGTCAACGACCATGGTGACGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCCCATATATTTTACCCCCTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGCTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGATGGCTAGCTTTATCAGAGCAGCAGCGTGGTTCTTCAGCGTGA 1311 0.45 MGVTDETSHVNNEWKPEKIQFEIPTRTSEDSCRDFVGIRMPLTPSPTPSHKRVNFLVTSRSVDAPRPSSSSAPRGKSSMRNILPRFGFKNRQSLDVEKAVTAVSEASFSGHQEKSSISRSVSLTKIFTHKINRTSSLPVEEIGRANVESALGGTLGASPCGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPQVHEVNESTKDTGLENGGGEDIGEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVQNLPVTLLRIRSVQTQNTGARSEQGDEYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFVSLPFSCVLGLLSSVTSTTMVTSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWLALSEQQRGSSA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02020 436 ProSiteProfiles Zinc finger RING-CH-type profile. 218 280 IPR011016 GO:0008270
Phac5g02020 436 SUPERFAMILY RING/U-box 222 277 - -
Phac5g02020 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 281 IPR013083 -
Phac5g02020 436 SMART ringv_2 225 274 IPR011016 GO:0008270
Phac5g02020 436 MobiDBLite consensus disorder prediction 59 77 - -
Phac5g02020 436 PANTHER OS02G0165000 PROTEIN 11 434 - -
Phac5g02020 436 Pfam RING-variant domain 226 273 IPR011016 GO:0008270
Phac5g02020 436 CDD RING_CH-C4HC3_MARCH 226 274 - -
Phac5g02020 436 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02020 Phac-Chr5 40149706 40154227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02020 223 280 C3H Transcription Factor Family AT2G37950 45.763 1.88e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02020 - - gmx:100782610 653.284