Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01998 ATGAAGGAAGCCGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTCTTTTACTTTCCTCAGGGACACGCAGAACACGCGCAGTCCAACCTCGATTTCGGAGCCTCCAGGATTCCGATTCCGCCGCTCGTTCTATGCCGCGTGGCGGCTGTCAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTGAGGTTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAAGACGGCGATAACGTTGACGGTAACGGCGCGGAGGGTTCTGAAAAGCCGGCGTCGTTCGCGAAGACGTTAACTCAATCGGACGCCAACAATGGTGGGGGATTCTCTGTGCCGAGATACTGCGCGGAGACGATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTTCGACACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCCATAGTGTTTCTGCGGGCTGAAAATGGGGATCTCTGCGTGGGGATTCGTAGAGCGAAGAGAGGGGGTGTTGGTGGGCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGCGGTGGCGGTGGGCTTGGGATTGGGCCTTATGGAGCCTTTTCGGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAGTGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTGCTTTGGCTGCTAACAACCAACCCTTTGAGATTGTTTATTACCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTGAGAGGTGCTATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACTATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTACGTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAGTCATCCATCTGGCACCATTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCTTTTGGGTCTAGCACCAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATAACTTTGTCAGATCTCCACCTTAACAATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTGATTTGCACACTGGGATTTCTAATGTTAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAGTTCACGCAAGAGTTTGGAGAAATCTGATCGAGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCAAGATCTTCTGGTGATGTGTTTTCTCAAAATTGCACCGCAACAGATGACGAGAATAAGGAGAAGAAGGAAAAGGGATTCCTTAGTGACTCCCAGTCTTCAGTTTCCCCAGGAAAGTCATGTTCCACCACCGAGTTCTCTTGGCAACTGGGTTCGGATACCAGTCATTGCAAGGTTTTCATGGAGTCCGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGATGAGCTGTACATGAGACTGGCCAGCATGTTTGGAATAGAACGGTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCCACCGGTGCTCTCAAACAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACCGCTAAAAGATTGACAATTCTGAGTGATTCAAGCAGCAAAGACAGTAGAAGGTGGGAGAAAATATAG 2028 0.5143 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEDGDNVDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGGGLGIGPYGAFSAFLREESKVVRSGCGRPKVSGESVREAIALAANNQPFEIVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGITLSDLHLNNNKLQLGLLPTNVRQLDLHTGISNVNITNHGKSKESLSCLLTMGSSRKSLEKSDRVKRHQFLLFGQPILTEQQISRSSGDVFSQNCTATDDENKEKKEKGFLSDSQSSVSPGKSCSTTEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLGSYDELYMRLASMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFMKTAKRLTILSDSSSKDSRRWEKI* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01998 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac5g01998 675 MobiDBLite consensus disorder prediction 538 568 - -
Phac5g01998 675 FunFam Auxin response factor 310 383 - -
Phac5g01998 675 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Phac5g01998 675 Gene3D - 110 214 IPR015300 -
Phac5g01998 675 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Phac5g01998 675 CDD B3_DNA 111 212 IPR003340 GO:0003677
Phac5g01998 675 Gene3D - 310 383 - -
Phac5g01998 675 SMART B3_2 112 214 IPR003340 GO:0003677
Phac5g01998 675 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac5g01998 675 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Phac5g01998 675 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
Phac5g01998 675 FunFam Auxin response factor 110 214 - -
Phac5g01998 675 Gene3D - 582 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01998 Phac-Chr5 39953974 39957999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01998 5 667 B3 DNA Binding Superfamily AT4G30080 60.651 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac5g01998 B3 4.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01998 - - gmx:100778135 1231.08