Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01997 ATGTACTGTAGTGTTTCGGAACCGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGATAATAACTTCAATGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGTTTTTTTGATTTCCCACTGGAAGATGTAGAAGAAGACTGGGATTCTCAATTTAAATGCCTTGAAGACCAACATTCTGAGATTTTTTCAGCGTCGTCAAATGGGCTGTGTGGCAAAACTCAAACTGAAAACCCCCAACTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAACTTTGACCGGCCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCAGCGCCGTTCAAGCTTGAGTCCACTATTTTCCATTCCTTACATCCTTAACGCACAGGCTTTGCAAAATCAGCAAAGGACATCTGCCTCTGAATCAGATTTCAAAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAGAAAAAAGGACTTGTCCCTGCTATCAGAAGATGTCGAGATGATGAGATCCTCACATCTGGTGTCAGATCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGCGTTCGATACAGGTCTGGCCGCCTCTTTCCTGAATACCGGCCAGCAGCTAGCCCAACTTTTGTTTCATCATTGCACTCCAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTTGAGGAGGGTGTTAGGGGTTCTATGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 975 0.439 MYCSVSEPDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEEDWDSQFKCLEDQHSEIFSASSNGLCGKTQTENPQLGTEFSVSCNGISPIKQLAKAPGPTYGKTIPLKNVTFNGKDLHQFRTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRRSSLSPLFSIPYILNAQALQNQQRTSASESDFKTNVAGNMSNKVKSHRKKDLSLLSEDVEMMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVSSLHSNCHKKVVEMRSRVEEGVRGSMFASSNLHGNSVG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01997 324 PANTHER GATA TRANSCRIPTION FACTOR 46 305 - -
Phac5g01997 324 Gene3D - 232 305 IPR013088 GO:0006355|GO:0008270
Phac5g01997 324 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Phac5g01997 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 295 - -
Phac5g01997 324 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Phac5g01997 324 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Phac5g01997 324 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Phac5g01997 324 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Phac5g01997 324 FunFam GATA transcription factor 227 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01997 Phac-Chr5 39941823 39946251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01997 20 313 C2C2-Gata Transcription Factor Family AT1G08010 36.137 2.19e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac5g01997 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01997 - - gmx:100813303 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01997 5 39941823 39946251 Phac5g01997 5 39941823 39946251 ECH
Phac5g01997 5 39941823 39946251 Phac11g02805 11 39446591 39450959 PCT