Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01987 ATGGAAAGCAAATGGAGAAAAGTGAAGCTCGCCATTGGGATCAACACCTGTGTTCAAGTCCCTAAGACCATGGACAACTCCTCCTCCTCCTCCTCTCTCCCATCTGCCACTTCCTTCTCCGACCGCTCCACCTCCTCCGCAACCTCCGCTCTCCGCCTCTCCAGATCCAAATCCAAATCCTCCAAGGGGACATGTGCAATTTGCCTGAGTTCAGTGAAACCAGGGCAGGGAAATGCCATATTTACTGCAGAATGTTCTCACTCTTTCCATTTCCAATGCATCACATCCAATGTGAAACACGGGAACCGGAATTGCCCCGTTTGCAGAGCAAAATGGAAAGAGGTTCCTTTTCAGAGTCGTTCTTCATCTAAGGTCTCCCATGAGATTAACCGAGTAAATTCATCACGAAATGATTCCTGGACAACTCTCATAGGGAGGTTTCCTTCTCAACAATCTGCTATAGGAGCACATCATCCATTTTCTAATGTTACTGAACCAGCTATCTTTGATGATGATGATGAAGTCTTGGGTCAACAAAATTCAGTTACCGATGGTTTGAATGAGGCTGATCACGATGTAATAAACCCATTGGAAATCAAAACATATCCTGAAGTTTCAGCTGTTGCAAAGTCAGCCTCTCATGATAACTTTGCTGTATTAATTAATCTCAAAGCTCCCCCTCGTTCAGAGAGTTACAGAAACAATACTGAATCATCATCATCATATTTTTCTGCACTAAATTCTCGTGCTCCAATTGACCTTGTCACGGTTCTTGATGTGAGTGGTAGCATGTCAGGCTCAAAGATTGCTCTACTGAAACGAGCTATGGGGTTTGTCATAGAGAATTTGAGTTCATCAGACAGGCTTTCTGTGGTTACCTTCTCTTCCACAGCCCATCGCATCTTTCGTCTTCGGAGGATGACTGTTGCTGGAAAACAGGATGCACTGCAGACAGTTTCTTCATTGGTTCCAGATGGTGTGACAAACATTGCAGAAGGCTTGAGGAAAGGTGCCAAAGTGTTTGCTGACCGCAGGTGGAAGAACCCAGTTGGCAGTATCATATTACTCTCTGATGGACAGGATTCACCCAGAAACTATAGCAGGTTCAATCTTGGAACTGATTACCGGTACCTTGTCCCAAACTCCATTCGTCGGAGCAATTGTATGGGCCTGCACATACCAGTGCATGCATTTGGCTTTGGTGTTGACCATGATGCTACAGCAATGCACACAATCTCTGAGATGTCTGGAGGTACTTTTTCCTTCATTGAAGACGAGGATGTGATTCAGGATGCATTTGCACAGTGTATTGGGGGACTATTGAGTGTGGTGGTTCAGGAATTACAGGTAGAAGTTCAGTGTGTTCACCCCCGTCTGCGATTTGGTTCAGTAAAAGCAGGAAGTTACCAAACTAACTTGATTGGAAAATTGGCATTTATCAAGGTAGGAGATTTGTATGCTGAAGAAGAAAGAGACTTTTTGGTGACATTGGATGTTCCGGTGGATAAGTCTAGTGATGTGATGCCTCTGTTGGTAGTCAGAGGTATTTATAGGGACCCCATCACAAAAGCAATGAAGGGTTTGACACTAAATAATGAAGTAAAGATTGAGAGGCCTGATGTAGCCAGAGATGTAGTTGTGTCGATAGAAGTAGACAAGCAGAGAAACAGGGTTCGAGTTGCTGAGGCAATGGCTGAGGCTAGAGTTAATGCTGAACGTGGTGATTTGTCTGCTGCTGTTTCTGTTATAGAGATGTGTCTCCAGGCATTGTCTGAAACTATCTCTGCCAAAGCTGGTGATCCACTATGCACTGCTCTTTCTGCTGAACTAAAGGAAATGCAGGAAAGAATGGCAAACCAACGTGTCTATGAGCATTCTGGAAGGGCTTATGTTCTCTCAGGATTGTGTGCTCATTCATGGCAAAGGGCAACTTCACGAGGAGACTCTACAGACGGCACCAGTCTTGTGAATGCATACCGAACCCCTTCCATGGTAGACATGGTTTCACGTTCTCAAACCTTGCTCTTGAGGCCTCAACCTGTAAATCTCCTCAAACCTGCTAGATCCTCTTTTGACAGGCACCAGCGGAGAAATTAG 2097 0.4492 MESKWRKVKLAIGINTCVQVPKTMDNSSSSSSLPSATSFSDRSTSSATSALRLSRSKSKSSKGTCAICLSSVKPGQGNAIFTAECSHSFHFQCITSNVKHGNRNCPVCRAKWKEVPFQSRSSSKVSHEINRVNSSRNDSWTTLIGRFPSQQSAIGAHHPFSNVTEPAIFDDDDEVLGQQNSVTDGLNEADHDVINPLEIKTYPEVSAVAKSASHDNFAVLINLKAPPRSESYRNNTESSSSYFSALNSRAPIDLVTVLDVSGSMSGSKIALLKRAMGFVIENLSSSDRLSVVTFSSTAHRIFRLRRMTVAGKQDALQTVSSLVPDGVTNIAEGLRKGAKVFADRRWKNPVGSIILLSDGQDSPRNYSRFNLGTDYRYLVPNSIRRSNCMGLHIPVHAFGFGVDHDATAMHTISEMSGGTFSFIEDEDVIQDAFAQCIGGLLSVVVQELQVEVQCVHPRLRFGSVKAGSYQTNLIGKLAFIKVGDLYAEEERDFLVTLDVPVDKSSDVMPLLVVRGIYRDPITKAMKGLTLNNEVKIERPDVARDVVVSIEVDKQRNRVRVAEAMAEARVNAERGDLSAAVSVIEMCLQALSETISAKAGDPLCTALSAELKEMQERMANQRVYEHSGRAYVLSGLCAHSWQRATSRGDSTDGTSLVNAYRTPSMVDMVSRSQTLLLRPQPVNLLKPARSSFDRHQRRN* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01987 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 117 IPR013083 -
Phac5g01987 698 Pfam von Willebrand factor type A domain 253 435 IPR002035 -
Phac5g01987 698 Gene3D von Willebrand factor, type A domain 253 438 IPR036465 -
Phac5g01987 698 SUPERFAMILY vWA-like 249 437 IPR036465 -
Phac5g01987 698 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 63 674 - -
Phac5g01987 698 ProSiteProfiles Zinc finger RING-type profile. 65 109 IPR001841 -
Phac5g01987 698 CDD RING-H2_WAVH2 64 114 - -
Phac5g01987 698 Pfam VWA / Hh protein intein-like 600 673 IPR032838 -
Phac5g01987 698 SMART ring_2 65 108 IPR001841 -
Phac5g01987 698 ProSiteProfiles VWFA domain profile. 253 437 IPR002035 -
Phac5g01987 698 MobiDBLite consensus disorder prediction 23 42 - -
Phac5g01987 698 SUPERFAMILY RING/U-box 60 115 - -
Phac5g01987 698 Pfam RING-like zinc finger 65 94 IPR001841 -
Phac5g01987 698 SMART VWA_4 251 433 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01987 Phac-Chr5 39843331 39847295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01987 59 109 C3H Transcription Factor Family AT5G41440 39.216 7.34e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01987 - - gmx:100811322 1010.75