Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01966 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTCCCTAACAATCTTGAACCGTTATCTTTGCAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTTGATGAACCAGTTGTTTATTCACTAGAAATGCCAAACTTCTCCACTTCTTTGAACCCTTTGTCAGCTCCAAAGAACGCATTGGAGTATCATCAAGAAATAGGGGCAGCTGAACCGAGTAATAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCTGCTATTCATTCTTCCCACAAGGAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAGCAAGGATCTGAGTGGTTTGTAAATTATGCAAGTAATGCCAATTCTTTTTTGTCTTCTGAGCTCAACAATGTGTCTTCTTACAACGAACTAATGGATGTACAGTGTAGCAATGCATCTGATGAAATCAGTGGTAGAGAAATTCAAAAGCAATTAGGTGTACTGCATAATCCTCCTCCTCCTTCTCCACTGTATCAGAATGCTTTGCAAGATATTGTGAAGTCGACTTCTATCAGCGCCCACACCAACCAAGATATGACTTCCCTAATGCAACAAAACGACCACAGCATCTGGGTGGGTGGTGCTAATGAAGTTGAGCTTCAACAACCGAGTTATGGAAATCAGCCAAATCCAGTGCGTTTTGGATGGACAAATCGAGCAATAGATAATATCCCGAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAATGCACAACCCAAGCCTTCTGTTTCTCAACATGAGCAAGGGTCTACATCCGATTATCCTCGTAGTTTGAAGTACATGAAACCGTCTATTGTTTCTAGAGATTGTGCGAAATCAGTTCAAGACACGGTGGGAATGCCTTCAAAGAGTACTATTAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAGGTCTGTCCAACAGTTGTTAGATGAGATCTTCTGTCTATCTGGTACAAAGTTTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCAGATACTGTTACTGTCAATGAAACTGGGGTTACTGCAAAAGGTAGTAACTCGGGTTCTTCATCAACTATGTTGTATAATCTCTCAAAGGAAAATAGTGCTGATTTGGGAGTTGGAAGTAGCTTTGATCTTTCTTCGCGGCCAGAGTATCAACAGAAGAAAGCAAAACTACTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTATTTCATCGTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTACATCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTCAAGCTTATAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTTCCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAACATGGACCAAAGTTTTCTAAGGAACAAATCTGGCAAGGGTACTACGGATCTTGATCCCCAGCAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACAGGCTGGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTGGAAACAAAAGCAACAGGCACCAAGGAGAAGAGTGGTAGACATGAGGGAACATCTTCTGGCCCTGAAGGTGATACCAGCCAACCTAGAGTGGATATGCCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCGATTTGAGGGTATGGAAATGGAATCAAGCAATGCTGAAGAAAGTGGGTTTAACGAAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAATGACATCAAATACTATGGATGGTACACTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTTGGTTCTGTGTCACTAACGTTGGGTCTTAGGCATGGCGTTGAAGGGGTACAACACCCACAACAATTGCAAGAGGAGCAGCTTAGACATCACCTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2352 0.4332 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYSLEMPNFSTSLNPLSAPKNALEYHQEIGAAEPSNRLMMNQYGSFSHSMPAIHSSHKEQCELRNLGNWRNSAPQQGSEWFVNYASNANSFLSSELNNVSSYNELMDVQCSNASDEISGREIQKQLGVLHNPPPPSPLYQNALQDIVKSTSISAHTNQDMTSLMQQNDHSIWVGGANEVELQQPSYGNQPNPVRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDYPRSLKYMKPSIVSRDCAKSVQDTVGMPSKSTISYRSVGPLGPFTGYATILKSSRFLRSVQQLLDEIFCLSGTKFAKSYDVSERVSPEVSASTSADTVTVNETGVTAKGSNSGSSSTMLYNLSKENSADLGVGSSFDLSSRPEYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLSSATPYISMALKSVSKHFRCLKNSISDQLKLISEALGEDVSIPSSSTGSKADTTMARIRCNMDQSFLRNKSGKGTTDLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHRLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTKEKSGRHEGTSSGPEGDTSQPRVDMPLSNIGMNSIPENRFEGMEMESSNAEESGFNEEQWSQEKRSKLECQMTSNTMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHPQQLQEEQLRHHLGGHMIHDFVG* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01966 783 Pfam Associated with HOX 353 511 IPR006563 -
Phac5g01966 783 MobiDBLite consensus disorder prediction 656 677 - -
Phac5g01966 783 SUPERFAMILY Homeodomain-like 572 636 IPR009057 -
Phac5g01966 783 Gene3D - 573 635 - -
Phac5g01966 783 SMART HOX_1 570 634 IPR001356 GO:0003677
Phac5g01966 783 MobiDBLite consensus disorder prediction 639 677 - -
Phac5g01966 783 MobiDBLite consensus disorder prediction 639 655 - -
Phac5g01966 783 MobiDBLite consensus disorder prediction 278 307 - -
Phac5g01966 783 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 232 656 - -
Phac5g01966 783 SMART prehox3 348 512 IPR006563 -
Phac5g01966 783 ProSiteProfiles 'Homeobox' domain profile. 567 630 IPR001356 GO:0003677
Phac5g01966 783 CDD homeodomain 570 631 IPR001356 GO:0003677
Phac5g01966 783 Pfam Homeobox KN domain 587 626 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01966 Phac-Chr5 39665846 39672481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01966 442 639 Homeobox Transcription Factor Family AT2G16400 50.754 2.18e-60 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phac5g01966 POX 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01966 - - gmx:100790583 1211.44