Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01949 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTACATAGAAAAGAATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCATGGGGAATTCTCCGATGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAGGAAACTCATGGGGCTGCTTCCTGCATCTCATCAAAGAATAGCACCCTATCAACACTCCTCCACCCAAAACCCTCCCTCATCATTTTCTTCTCAATCATCTCTATCCTCTTCAATCTATAGGGACTACTGCAACAACTCTCATTATCACATCCCAGCACCAACCTCGTCTTTCCCATGCCTTCAACAAATTTCTGTTCCTTCAAGTAATTACACGAGCACAAGCACCTCTCTCCCTTTGTATCAAAACCAAGAGCCTTTGGTGAGTGTTAGTCCCATGCAGTATTACCCCAACACAGACAGTTCCATGCTTGTGTTTGGAAGTGAAACAAGTTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTTGGCAGAGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTAATGTTTGGAGATCAGAACACGAACAGATTTATGCTTAGTCAAGGCAACATTAATCATGATGGAGGTGAGGAGTATGTGCACCAATGGACAGAGAAGCCAAACGGGTGCTTCTTCCAAACGCAACAAACAGCACTCGATTATGATCTTGAGGTTATTAAACAACTGATTAGTACTAACAGTGGTAGTAATTATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTACTGA 1014 0.429 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKNGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPYQHSSTQNPPSSFSSQSSLSSSIYRDYCNNSHYHIPAPTSSFPCLQQISVPSSNYTSTSTSLPLYQNQEPLVSVSPMQYYPNTDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEEMGFQNLMFGDQNTNRFMLSQGNINHDGGEEYVHQWTEKPNGCFFQTQQTALDYDLEVIKQLISTNSGSNYSNNGYFSIDENKTEKGVYYNY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01949 337 PANTHER OS09G0431300 PROTEIN 1 287 - -
Phac5g01949 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phac5g01949 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phac5g01949 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Phac5g01949 337 Gene3D - 69 142 - -
Phac5g01949 337 FunFam Transcription factor RAX3 7 68 - -
Phac5g01949 337 CDD SANT 16 62 IPR001005 -
Phac5g01949 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phac5g01949 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phac5g01949 337 Gene3D - 7 68 - -
Phac5g01949 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phac5g01949 337 FunFam Transcription factor MYB36 70 140 - -
Phac5g01949 337 CDD SANT 70 113 IPR001005 -
Phac5g01949 337 SMART sant 13 64 IPR001005 -
Phac5g01949 337 SMART sant 67 115 IPR001005 -
Phac5g01949 337 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01949 Phac-Chr5 39433784 39436013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01949 1 119 MYB Transcription Factor Family AT5G57620 88.235 1.16e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac5g01949 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01949 K09422 - gmx:100796382 541.191