Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01937 ATGGATGCAATTCACCAAGACACACTGGCTTACATCAATGATTTTGAGCTGTACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATTAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGACTTCGGTTCTGACCTCATCAATGATTGTTTTGTTAACAATCAGCTCCTACCATGCCCTTCCTACCCTTTTGATCAGAACAATAACAATGCTGTGAATGTCTATGATCAAAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGAATATGAAGGGAGAAGGAGAAAGAGAAGAAGAAGAAGAACATGATGGAGAGAATTCTTCTGAAACAACCACGACAACCACGACCAAGAATGATGATTGCAAACCCAAACTAAAAAATGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGATCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCCCTATTAGTGTCTGAAAACTATCAAGGATCAGCTAACAATCCCAAAAATGTGCAAGCGGCCCGTAATACTCATCCAATCTGCAAGAAGATCATGCAGGTGGAGATGTTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTTTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTATTCAGGGCTCTTGAGTCTCTTGCAGGCTTTAATGTTCAGAATTCAAACTTGGTTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGATCAGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCGTTTTCTGGTTGA 963 0.4123 MDAIHQDTLAYINDFELYDFVDNPNFDQFINLIRGENEDANCDFGSDLINDCFVNNQLLPCPSYPFDQNNNNAVNVYDQSSTFSSFSCFDGNMKGEGEREEEEEHDGENSSETTTTTTTKNDDCKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHDLQAQARKLKAEVAGLEASLLVSENYQGSANNPKNVQAARNTHPICKKIMQVEMLQVEERGYYAKIVCNKGEGVAASLFRALESLAGFNVQNSNLVTVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01937 320 Coils Coil 176 196 - -
Phac5g01937 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 126 196 - -
Phac5g01937 320 Gene3D - 120 196 IPR036638 GO:0046983
Phac5g01937 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Phac5g01937 320 MobiDBLite consensus disorder prediction 92 129 - -
Phac5g01937 320 SMART finulus 136 185 IPR011598 GO:0046983
Phac5g01937 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 310 - -
Phac5g01937 320 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Phac5g01937 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01937 Phac-Chr5 39316851 39318290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01937 9 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.698 4.52e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac5g01937 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01937 K26214 - gmx:100805451 490.345