Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01934 ATGATTTCAAGGGCCACATCTAGCTTCCAAAATCATCAAGGGCTTCGGATGTTCTCTGACCCAGAAGATTTGGTGTCACCCTCTGTAGAGTCTGGCTCAGCTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTTGGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATGAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACATCAATGATGCTTACCTGCCAACAGATGGCTCTCACCACTACCCCTTCAGGTACTAATGATACTACTACATGCACCAACAAATTGCACCAGCTGAACAAGTTATTGCCTCACTCAAATTTTGGCACAAATAGAAGTGTGCTTGGTAACATAGGCATAGATATCAGTGACCATCATCAGGGTTTATTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGAGGATAATAGCAATATTATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGTAGTTAGTGAAAACAATATGATTATAAGTAGAGGTGGAGAAGAACATGAACCTAACGAAGAGTGGTATAATCATAGAGGGCTTTCACCAAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTGAGCAACCCAATTAAGAATATGGGGAAGTTAGAAAGGGAAAGCGAGATTTTGATGAGCCTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCGAAAGCATGCCAAATTCCAGCCATTGAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAGCAGTTCTCTGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCGTTTTCTAGGAAAGACAAACTCATGGGCCATGTTGCTTTGTTCGTGGGGCACCAACCAGCTATCACCAATATTGCTCTGTCATCATACTCGGCAAAATTGGAGCAGCACACATTGCAAATGCAGATTGATGGTAGCTCAAGATGA 1245 0.4394 MISRATSSFQNHQGLRMFSDPEDLVSPSVESGSASHSSTLLFNLSILKDKVGEVQTLVGVILSPNESLPESTSMAISSMNSTIQEIIVTATSMMLTCQQMALTTTPSGTNDTTTCTNKLHQLNKLLPHSNFGTNRSVLGNIGIDISDHHQGLFSSTESEALDWFSESYNNNEDNSNIISKTKEDDPSVVVSENNMIISRGGEEHEPNEEWYNHRGLSPKNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNMGKLERESEILMSLKPKRYSCPQEGCRWNRKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAITNIALSSYSAKLEQHTLQMQIDGSSR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01934 414 Gene3D Classic Zinc Finger 231 296 - -
Phac5g01934 414 SMART c2h2final6 294 327 IPR013087 -
Phac5g01934 414 SMART c2h2final6 237 259 IPR013087 -
Phac5g01934 414 SMART c2h2final6 332 354 IPR013087 -
Phac5g01934 414 Gene3D Classic Zinc Finger 330 380 - -
Phac5g01934 414 SUPERFAMILY beta-beta-alpha zinc fingers 235 262 IPR036236 -
Phac5g01934 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Phac5g01934 414 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Phac5g01934 414 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 392 IPR044300 GO:0010044|GO:0010447
Phac5g01934 414 FunFam Zinc finger protein 574 236 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01934 Phac-Chr5 39274510 39276183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01934 19 387 C2H2 Transcription Factor Family AT5G22890 45.312 3.65e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g01934 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01934 - - gsj:114375424 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01934 5 39274510 39276183 Phac5g01934 5 39274510 39276183 ECH