Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01929 ATGGCTGTTGCTGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCGTCTGGGAGGCAAGGAGATGGAGGTAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGTAGGAAGACCAGTCCAGGGAAGACCTGGGGAGGTTTTACTTCAACAAAGGAGTGATGAGTTGGTTGTGGACCCCTCACATGAAGATATGCCATATAGCAACCAGAGAGAAGGGCATGTGATAGAGGATGCAGGTTTTGGTGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACATGAGGAATTGAACAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATTCCCAAGGAAACAGGGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGAGGCGGGGAAACTGAGCAGGAAAGGGTGAGTATAAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCTTCTGGGGAAAATCGGGACGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTAATCAGAACGAGGGCCAAACTGAGCATACCCGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGACATGCTTAAGAAGGCTCAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGCTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTTTGGTTGTAGTCAAGCAACCAGTAACCTATCTGATATCTCTTCCGAGAGTGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCAGTCCCGACTGTACATTCAGAGCAATCTGGGCCTAATAACAATGGAAGTGACGGAATTGAGATACCATGTGATCAGATTTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGTCTCTGCCGCCCATATAGAAACAAGAGATTGGGAATCATCTTCCAGTATGAGGGTTGAAAGAGGAGATGGCACTGGACAAACTGTTGCTATGATGACAACTGAAGATCCTTCTAACGACCTTACCCAACACAGCTTGCAAATTGAAGATACACAGGATGACAATATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATAATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTTAGTAACACAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAACCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCGTATGTTGAAAGGCAAGGTCACGCTAATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCAGGGCAACAGACTAGGGACCCAGTCGTTGGTCCTCAGAGTATTGTTAACAGCTCACTTGACCACCGCCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCTCGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCTTAGGAATTGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTAGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTGAATCGTTCAACTGGTTCATCAGGAATACATGACCGTGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAGGGACTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACGTGTTCAAAATGTGCAAATGATTTACACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2535 0.4426 MAVAGVHNVTALESTFLRESLSQSSGRQGDGGRGGTRSSSVLQMWREIEDEQVGRPVQGRPGEVLLQQRSDELVVDPSHEDMPYSNQREGHVIEDAGFGENDSETWSQSQNEFHDEHEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGETEQERGGETEQERVSIREWVQMSSQQRGVSSGENRDEQSSETGTQIECVRDGFVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQATSNLSDISSESDIDVNAIEQTGASSSQAVPTVHSEQSGPNNNGSDGIEIPCDQICSQGTPCEKLDWQVSAAHIETRDWESSSSMRVERGDGTGQTVAMMTTEDPSNDLTQHSLQIEDTQDDNMQELSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEQQEEVIIENDGSDWHQSVDDHQLSNTTNEWPQNILGSEDGENSRMQEQETPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANVEWELQETTPSSPLAEQDSGQQTRDPVVGPQSIVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIHDRVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01929 844 SUPERFAMILY RING/U-box 791 837 - -
Phac5g01929 844 Coils Coil 720 747 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 109 135 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 14 45 - -
Phac5g01929 844 Pfam Zinc finger, C3HC4 type (RING finger) 789 836 - -
Phac5g01929 844 ProSiteProfiles Zinc finger RING-type profile. 792 831 IPR001841 -
Phac5g01929 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 842 IPR013083 -
Phac5g01929 844 MobiDBLite consensus disorder prediction 73 98 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 150 165 - -
Phac5g01929 844 CDD mRING-HC-C3HC5_NEU1 792 841 - -
Phac5g01929 844 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 844 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 14 135 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 649 680 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 147 220 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 185 220 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 357 380 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 166 184 - -
Phac5g01929 844 MobiDBLite consensus disorder prediction 649 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01929 Phac-Chr5 39214129 39220172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01929 792 838 C3H Transcription Factor Family AT3G06140 38.298 3.74e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01929 - - gmx:100804887 1360.51