Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01896 ATGGAGCCTCCTGTAGTGAGATCTAGGGGTCGCCCGCGCAAACGGAGAAGAGAAGAGGACGGAACCGTCGCCGGCGATCCGAAAGCGTTTCCTGAGGCAAAGAAGTCGCCTCCGGTTGTACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCAGGAACACGGTTCTTCTCGGCAAAGTCGTCCGCTACGAGCGCGGATTGTACAGAGTCGTGTACGAGAGTGGCGGATTTGAGGATTTAGATAGCAGCTTGATTCGTAGGATACTTCTCCTTGATAGCTATTTTGACGATGATTTGATTAGGAGGAAAGGCGAATTGGAGGAATCGGTGTTGCCGAAAATCGCGGAGGAACGTGAGAGCAATTCCAGCGAATTGCGAGACGATTTAATGGTTGAGAACGAAGAGGAACGAAATGAAACGGACGATGAGTCGTGCGGCGAGGCCATGAATTTGAGTTCCGATGCCGAAACGCCGATTCCAACTCCACCAACGCTGCCGCCGTCTTCAGGAACAATTGGCGTTCCGGAATCGTGCGTTTTGAATCTCCTTTCAGTGTACGGATTCTTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTGGACGAGTTTGTAGGTGCTTTGAACTGTAAAGTTTCGAACACGTTGCTCGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCAACCGATGGCTCGCGGCGTGCAACAAAATGCCTTAGGTGCATTGATTGGCGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGCGTTTCAATATCTAGCAATTTATGGTTACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTTATGGCGAGTACTATTTATTGCCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGCTTTGGCATCTGAGGAGTTTAAAGCTGAAATGAGCATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTAACTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGATGTTGATGGAAATGGAGATGAATGCCGCTTATGTGGCATGGATGGAACTTTACTTTGCTGTGATGGTTGTCCTGCTGTTTATCATTCTAGATGTATTGGTGTGATGAAGATGCATATACCAGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTACAATTGCACGGGGAACATCACTTAAAGGGTCTGAAGTATTTGGAATGGATTTGTATGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGCTCAATGTCAACAGTGATGAATTTTGTCTTAAGTACTACAATCAGAATGATATTCCTGAAGTTCTTCAAGTCCTCTATGCATCCGAGAAACTTAGACCTATATACAATGGTATTTGCATGACAATTTTAGAATATTGGAAAATTCCAGAAAACTTCGTATCCATTTGTGTCACAAGTGTACCACAAGTAAACTTAACAAATTCGAACACAGAAGTGAAGGCAGAATACAGTTTAACATTTGCAAATGGAATTTGTGGTGATAATGGTTCTTTGGTTACAACTTGTGGTCCTGCTCCTGGAAGCAGTGACAATACGAGAACTACTGTTAATTTGAAGCATTGTGAGGAAACTGCCATGAATTCAGTAGTTTCAATTGTTAACCATCAGTCCAATCCGAAGTATGAAGATTCTTTTAACAAGTCAGCTGCAGTTGGCCCTGCTAAGTACTCCTTTGTAAGCAGCCAGTTTAATAATTATGGGCACGCAAATGACATAAGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTAACTAATGATTTTGTGTACACTGGTTGCTCCTATAAACCACAGTCATACATTAATTGCTATATGCACGGTGATTTTGCGGCATCCGCCGCTGCTAACCTGGCTGTTCTTTCTTCAGAGGATTCTAGATCAGTGGGTCATGTGTCTGATAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTTTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTATTTCAAGCAAGAAAGGATGTATGTTGAATCATGCTGCTCTAAGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATAGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTTTAAGTGAATGCTATAGAAGGCATTGGCGTAAACAAGTGGAACGAGCCACATCATTCCGTGATATAAAACCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGATGAAGTTGATGGATGATTGGTTGGCGGAATTTTCCACAATTCAAAGTGCTACAGTAACTCTTGGAACTACACAGAAACGTGCGACATGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGCTTGTCCTGAAAATTTTACATGGTGGCATGGTGGGAAATTTTCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGCCAGAAAAGCAGCTCGACAAGGTGGTTTGAGGAAAATTTTGGGTATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTATGGAGGGCTGCAGTACAAATGAGTAGGAATGCATCCCAGTTGGCCCTTCAGGTCCGTTATCTAGATTTTCATGTCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAGTTGTGGAGGACAAAATTTTATATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAATAGAGCAAGATCCTGAAGGAAAGGAAAAATATTGGTTTTCTGAAAAACGCATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGCAATGGAAAAAGGCTATCTGATGAAGAGTACCTGTACATCACATCTCAGTTGCACCGAAGGCATTTGAAAACTACCTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAACTGAACATGTTATCATGCTCTGTTTGTCAGCTGAGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACGTGTGAAGAAGTTGAGTTCTTGGCCACATGTAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGTGTCTTGTAATGAGTCTCCAACTAGTCCCTTGCTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGACCAGGGCCTAAATGTGATGGTCAAGGATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACATGAAACGAGTTTCTTCTGATTTCCCTTCGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTATTATATGGAAAAAGAAGAACAACGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGAAGCCTGTTTGTCGCTTGTGCCAGAAACCATATAAGTCTGATCTAATGTATATCTGTTGTGAAACATGTAAACGTAAGTTTTCTACCAAGGTAATAAATGCTGACATTTTTACCTACTTACCCTTTATTTATCTAATTTCTGAGTTTTACAGATTGGTACCATGCTGA 3987 0.4161 MEPPVVRSRGRPRKRRREEDGTVAGDPKAFPEAKKSPPVVLVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGFEDLDSSLIRRILLLDSYFDDDLIRRKGELEESVLPKIAEERESNSSELRDDLMVENEEERNETDDESCGEAMNLSSDAETPIPTPPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISTDGSRRATKCLRCIDWRLLDALTWPVFAFQYLAIYGYTKGPEWKGFYDEIFYGEYYLLPASRKLMILQILCDDALASEEFKAEMSMREESEVGIDYDNEDSLTTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPTIARGTSLKGSEVFGMDLYGQVFMGTCDHLLVLNVNSDEFCLKYYNQNDIPEVLQVLYASEKLRPIYNGICMTILEYWKIPENFVSICVTSVPQVNLTNSNTEVKAEYSLTFANGICGDNGSLVTTCGPAPGSSDNTRTTVNLKHCEETAMNSVVSIVNHQSNPKYEDSFNKSAAVGPAKYSFVSSQFNNYGHANDIRLPMNLSLQTKGDQSGFGKCKGSLTNDFVYTGCSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSVGHVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYIEESLRGLIVGPFLSECYRRHWRKQVERATSFRDIKPLLLKLEENIRTIAFCGDWMKLMDDWLAEFSTIQSATVTLGTTQKRATCGRRKKQLSINKVTAGACPENFTWWHGGKFSKSVFQKAVLPKSMARKAARQGGLRKILGILYADGSEIPKRSRQVVWRAAVQMSRNASQLALQVRYLDFHVRWSDLIRPEHNLLDVKGQDTEASAFRNANIHEKRVVEDKILYRVAFGSQKHLPSRVMKHVEIEQDPEGKEKYWFSEKRIPLYLVKEYEMRNGKRLSDEEYLYITSQLHRRHLKTTYKDIFFYLTCKRDKLNMLSCSVCQLSVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKVSCNESPTSPLLLEGQEQSTSAVLKGPGPKCDGQGLMSSRTKNSRSDMKRVSSDFPSETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLKPVCRLCQKPYKSDLMYICCETCKRKFSTKVINADIFTYLPFIYLISEFYRLVPC* 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01896 1328 MobiDBLite consensus disorder prediction 1194 1234 - -
Phac5g01896 1328 MobiDBLite consensus disorder prediction 117 160 - -
Phac5g01896 1328 MobiDBLite consensus disorder prediction 1216 1230 - -
Phac5g01896 1328 SMART testlast3 176 236 IPR018501 -
Phac5g01896 1328 SMART PHD_3 1116 1165 IPR001965 -
Phac5g01896 1328 SMART PHD_3 382 425 IPR001965 -
Phac5g01896 1328 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Phac5g01896 1328 PANTHER PHD FINGER FAMILY PROTEIN 118 1305 - -
Phac5g01896 1328 Pfam PHD-finger 383 425 IPR019787 -
Phac5g01896 1328 CDD PHD2_CHD_II 383 424 - -
Phac5g01896 1328 MobiDBLite consensus disorder prediction 117 133 - -
Phac5g01896 1328 MobiDBLite consensus disorder prediction 1 31 - -
Phac5g01896 1328 SUPERFAMILY FYVE/PHD zinc finger 375 431 IPR011011 -
Phac5g01896 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Phac5g01896 1328 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Phac5g01896 1328 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 322 IPR028942 -
Phac5g01896 1328 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Phac5g01896 1328 Pfam DDT domain 178 233 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01896 Phac-Chr5 38906159 38913927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01896 267 517 EF-hand Containing Proteins AT5G22760 46.545 9.17e-72 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac5g01896 DDT 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01896 - - gmx:100808614 2189.07