Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01894 ATGGAGCCTCCTGTAGTGAGATCTAGGGGTCGCCCGCGCAAACGGAGAAGAGAAGAGGACGGAACCGTCGCCGGCGATCCGAAAGCGTTTCCTGAGGCAAAGAAGTCGCCTCCGGTTGTACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCAGGAACACGGTTCTTCTCGGCAAAGTCGTCCGCTACGAGCGCGGATTGTACAGAGTCGTGTACGAGAGTGGCGGATTTGAGGATTTAGATAGCAGCTTGATTCGTAGGATACTTCTCCTTGATAGCTATTTTGACGATGATTTGATTAGGAGGAAAGGCGAATTGGAGGAATCGGTGTTGCCGAAAATCGCGGAGGAACGTGAGAGCAATTCCAGCGAATTGCGAGACGATTTAATGGTTGAGAACGAAGAGGAACGAAATGAAACGGACGATGAGTCGTGCGGCGAGGCCATGAATTTGAGTTCCGATGCCGAAACGCCGATTCCAACTCCACCAACGCTGCCGCCGTCTTCAGGAACAATTGGCGTTCCGGAATCGTGCGTTTTGAATCTCCTTTCAGTGTACGGATTCTTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTGGACGAGTTTGTAGGTGCTTTGAACTGTAAAGTTTCGAACACGTTGCTCGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCAACCGATGGCTCGCGGCGTGCAACAAAATGCCTTAGGTGCATTGATTGGCGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGCGTTTCAATATCTAGCAATTTATGGTTACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTTATGGCGAGTACTATTTATTGCCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGCTTTGGCATCTGAGGAGTTTAAAGCTGAAATGAGCATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTAACTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGATGTTGATGGAAATGGAGATGAATGCCGCTTATGTGGCATGGATGGAACTTTACTTTGCTGTGATGGTTGTCCTGCTGTTTATCATTCTAGATGTATTGGTGTGATGAAGATGCATATACCAGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTACAATTGCACGGGGAACATCACTTAAAGGGTCTGAAGTATTTGGAATGGATTTGTATGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGCTCAATGTCAACAGTGATGAATTTTGTCTTAAGTACTACAATCAGAATGATATTCCTGAAGTTCTTCAAGTCCTCTATGCATCCGAGAAACTTAGACCTATATACAATGGTATTTGCATGACAATTTTAGAATATTGGAAAATTCCAGAAAACTTCGTATCCATTTGTGTCACAAGTGTACCACAAGTAAACTTAACAAATTCGAACACAGAAGTGAAGGCAGAATACAGTTTAACATTTGCAAATGGAATTTGTGGTGATAATGGTTCTTTGGTTACAACTTGTGGTCCTGCTCCTGGAAGCAGTGACAATACGAGAACTACTGTTAATTTGAAGCATTGTGAGGAAACTGCCATGAATTCAGTAGTTTCAATTGTTAACCATCAGTCCAATCCGAAGTATGAAGATTCTTTTAACAAGTCAGCTGCAGTTGGCCCTGCTAAGTACTCCTTTGTAAGCAGCCAGTTTAATAATTATGGGCACGCAAATGACATAAGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTAACTAATGATTTTGTGTACACTGGTTGCTCCTATAAACCACAGTCATACATTAATTGCTATATGCACGGTGATTTTGCGGCATCCGCCGCTGCTAACCTGGCTGTTCTTTCTTCAGAGGATTCTAGATCAGTGGGTCATGTGTCTGATAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTTTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTATTTCAAGCAAGAAAGGATGTATGTTGAATCATGCTGCTCTAAGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATAGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTTTAAGTGAATGCTATAGAAGGCATTGGCGTAAACAAGTGGAACGAGCCACATCATTCCGTGATATAAAACCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGATGAAGTTGATGGATGATTGGTTGGCGGAATTTTCCACAATTCAAAGTGCTACAGTAACTCTTGGAACTACACAGAAACGTGCGACATGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGCTTGTCCTGAAAATTTTACATGGTGGCATGGTGGGAAATTTTCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGCCAGAAAAGCAGCTCGACAAGGTGGTTTGAGGAAAATTTTGGGTATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTATGGAGGGCTGCAGTACAAATGAGTAGGAATGCATCCCAGTTGGCCCTTCAGGTCCGTTATCTAGATTTTCATGTCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAGTTGTGGAGGACAAAATTTTATATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAATAGAGCAAGATCCTGAAGGAAAGGAAAAATATTGGTTTTCTGAAAAACGCATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGCAATGGAAAAAGGCTATCTGATGAAGAGTACCTGTACATCACATCTCAGTTGCACCGAAGGCATTTGAAAACTACCTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAACTGAACATGTTATCATGCTCTGTTTGTCAGCTGAGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACGTGTGAAGAAGTTGAGTTCTTGGCCACATGTAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGTGTCTTGTAATGAGTCTCCAACTAGTCCCTTGCTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGACCAGGGCCTAAATGTGATGGTCAAGGATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACATGAAACGAGTTTCTTCTGATTTCCCTTCGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTATTATATGGAAAAAGAAGAACAACGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGAAGCCTGTTTGTCGCTTGTGCCAGAAACCATATAAGTCTGATCTAATGTATATCTGTTGTGAAACATGTAAACATTGGTACCATGCTGAAGCTGTCGAACTTGAAGAGTCCAAACTTTTTGATGTGCTGGGCTTTAAATGTTGCAAGTGTCGCAGGATAAAATCGCCTTTATGTCCTTTCTCTGATTTGAGTTACAAGACTCAAGAGGGCAAGAAGTCTTCAAGGGATTCAAAGAAAGAGTACTTCGGGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGAACATGTGAGCCTGCAACTCCTATCTATCCTGCTGTAGATGTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACCTGAGTTAGATGCAAAGGGTGTGGACAATACTGTCTCCGGGCCAGGACTTGGGAAGTCATCTAAACGTGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTTCATGCTGAGTTCTCAACCAGCAATGAAATGGTTTCCAAATCAGTAAAAGATTTATCTCCTGTAGAACATGTCTCTACTGACTGCAGTCTTTTGAAGGACCCCGAAATTGTAAATTATGATGAGTTGGTGGATTTTGAACCTCATACCTACTTCTCCCTGACTGAACTTCTCCACTCAGATGAGAATATTCAATCTGAGGAAGCTAATGCGTCTCGGGTCTTCTCGGGGTGTTTGACAAAATCTTGTACATTAGATGTTCCTGAAGAATGCGGGAGTGTTAATTTAGCATCCAACTGTGAGCCTACAAATCTGTTACAAGGAAATGTTAATAGTTGTCGCCAATGTTCAGAAAAGGAACCGGTCCCTGATCTCCATTGTCAGATTTGTAGGATTTGGATTCACAGCCAGTGTTCACCTTGGGTTGAATCACCATCTCGGCTTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4791 0.421 MEPPVVRSRGRPRKRRREEDGTVAGDPKAFPEAKKSPPVVLVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGFEDLDSSLIRRILLLDSYFDDDLIRRKGELEESVLPKIAEERESNSSELRDDLMVENEEERNETDDESCGEAMNLSSDAETPIPTPPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISTDGSRRATKCLRCIDWRLLDALTWPVFAFQYLAIYGYTKGPEWKGFYDEIFYGEYYLLPASRKLMILQILCDDALASEEFKAEMSMREESEVGIDYDNEDSLTTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPTIARGTSLKGSEVFGMDLYGQVFMGTCDHLLVLNVNSDEFCLKYYNQNDIPEVLQVLYASEKLRPIYNGICMTILEYWKIPENFVSICVTSVPQVNLTNSNTEVKAEYSLTFANGICGDNGSLVTTCGPAPGSSDNTRTTVNLKHCEETAMNSVVSIVNHQSNPKYEDSFNKSAAVGPAKYSFVSSQFNNYGHANDIRLPMNLSLQTKGDQSGFGKCKGSLTNDFVYTGCSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSVGHVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYIEESLRGLIVGPFLSECYRRHWRKQVERATSFRDIKPLLLKLEENIRTIAFCGDWMKLMDDWLAEFSTIQSATVTLGTTQKRATCGRRKKQLSINKVTAGACPENFTWWHGGKFSKSVFQKAVLPKSMARKAARQGGLRKILGILYADGSEIPKRSRQVVWRAAVQMSRNASQLALQVRYLDFHVRWSDLIRPEHNLLDVKGQDTEASAFRNANIHEKRVVEDKILYRVAFGSQKHLPSRVMKHVEIEQDPEGKEKYWFSEKRIPLYLVKEYEMRNGKRLSDEEYLYITSQLHRRHLKTTYKDIFFYLTCKRDKLNMLSCSVCQLSVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKVSCNESPTSPLLLEGQEQSTSAVLKGPGPKCDGQGLMSSRTKNSRSDMKRVSSDFPSETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLKPVCRLCQKPYKSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPLCPFSDLSYKTQEGKKSSRDSKKEYFGGDSDSGTPIDRRTCEPATPIYPAVDVSRQDNDPLLFSLSSVELITEPELDAKGVDNTVSGPGLGKSSKRERENNGSFRGNLHAEFSTSNEMVSKSVKDLSPVEHVSTDCSLLKDPEIVNYDELVDFEPHTYFSLTELLHSDENIQSEEANASRVFSGCLTKSCTLDVPEECGSVNLASNCEPTNLLQGNVNSCRQCSEKEPVPDLHCQICRIWIHSQCSPWVESPSRLASWRCGDCREWR* 1597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01894 1596 SMART PHD_3 1116 1165 IPR001965 -
Phac5g01894 1596 SMART PHD_3 1276 1324 IPR001965 -
Phac5g01894 1596 SMART PHD_3 1548 1593 IPR001965 -
Phac5g01894 1596 SMART PHD_3 382 425 IPR001965 -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 117 160 - -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1194 1234 - -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1216 1230 - -
Phac5g01894 1596 SMART testlast3 176 236 IPR018501 -
Phac5g01894 1596 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Phac5g01894 1596 Pfam DDT domain 178 233 IPR018501 -
Phac5g01894 1596 CDD PHD2_CHD_II 383 424 - -
Phac5g01894 1596 SUPERFAMILY FYVE/PHD zinc finger 375 431 IPR011011 -
Phac5g01894 1596 SUPERFAMILY FYVE/PHD zinc finger 1275 1329 IPR011011 -
Phac5g01894 1596 CDD PHD_TCF19_like 1276 1323 - -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 117 133 - -
Phac5g01894 1596 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 322 IPR028942 -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1 31 - -
Phac5g01894 1596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1267 1336 IPR013083 -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1342 1356 - -
Phac5g01894 1596 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1408 1437 - -
Phac5g01894 1596 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Phac5g01894 1596 Pfam PHD-finger 383 425 IPR019787 -
Phac5g01894 1596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Phac5g01894 1596 MobiDBLite consensus disorder prediction 1342 1371 - -
Phac5g01894 1596 PANTHER PHD FINGER FAMILY PROTEIN 38 1560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01894 Phac-Chr5 38906159 38913927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01894 267 517 EF-hand Containing Proteins AT5G22760 46.545 1.80e-71 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac5g01894 DDT 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01894 - - gmx:100808614 2654.01