Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01893 ATGGGGAGCAAGGTCGGCGATCACCAGTTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATCAGAGCACTCCACATGGCTAAAAACGACGTCAATGCCGCCATCAACATCATCTTCGATACTCACACCGCCACAAGATTCAATCCCACGCCTCCCAACAATCAACGTGTTTCTCCTCTTAAACCCTCCCCTTCCACTCCTATGACGGCCAAGCCTAGCTTCTGTGAACAACACATCATCGATAATAATAATAACAGTGATGATTGGTGGTTTGTGAGTTGCGGGGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGACTCTAAACACCGGCGAGACGGTGACTTTCACGTTTCCGATCAAGAAGTTATCTTCCCCCTCTCCGGGGAGGGGGTTTGGACGGGCTGCGGCGTGTTCGGAGATAGTTCGTTTCTCCACTGAACAAGCTGGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGAGGGATCATAAGGTTAGGATTGAGGGGAAGTGCAAATCTGCTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTGAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACTGATGAATCAGTGTTTCATCCACTACCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTGAAAAAGGCAGAGTTAACTCCAGGTGATTTCTATTCCAACAAGCGTCCTCTCAGTGAAAGGGTAACATTACCACGTGCCAAGTTTGAGCACCCTTCCCAAAATGGCCATGAGAATGACAATGGGGATTCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGCGCAGAGTTAGAGGAAATGGAACCCCCTGCTACTCTTCAGTGCGATCTACGGCCTTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATGCATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCCTGGTTGACAAGAGGGAGCTTATTGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATTGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCGGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCACGAAAGGGTGAATCAGTAAGCAATCAACCCATAACCAAGTCCTGTACTGAAGGAGGTGAAGTTAGTGATACAGTGCATACTTTTTCAAACATACCCAAGAAGGCAACCAAATTTTCTGGTTTTGATAAACCAACGAAGCAAAGGAATTCTCTAACAAGCGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCAAAAAGATGCAAAAATTCTGGCTCAGAGTGATATTGTAATTACTACATATGGAATTTTGTCCTCTGAATTTTCAAGCGAGAATCCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAAGTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTCGAGGGTGGCGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGGCAATTATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGATAATTTACTGTGAACAGACAGAAGCTGAAAAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTCGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATACTTCAGATGGTGAAGTAAAAGAGGCACCTTCACTGGCGTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGATTATGCCGGGAATGCCTCTTGGCAAGTTTCCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAGCAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGGTGACTGCTCTTTTGAATGAACTAAAAATCCTTTGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCTTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTGCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACCACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGTCCATTACACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTACGAAGTGCACGAATTGAGGAGTTAAAGATGCTTTTTACTTAG 3006 0.4468 MGSKVGDHQLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIIFDTHTATRFNPTPPNNQRVSPLKPSPSTPMTAKPSFCEQHIIDNNNNSDDWWFVSCGEVTGLSTCKGRTLNTGETVTFTFPIKKLSSPSPGRGFGRAAACSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGKCKSAPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPLKKAELTPGDFYSNKRPLSERVTLPRAKFEHPSQNGHENDNGDSISEIEVENIVGVGSSAELEEMEPPATLQCDLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELIVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSRKGESVSNQPITKSCTEGGEVSDTVHTFSNIPKKATKFSGFDKPTKQRNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRQKDAKILAQSDIVITTYGILSSEFSSENPDDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALSADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKAIMLRRTKHSTDREGKPILVLPPADMQIIYCEQTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLSKLAKRFLRGTYNTSDGEVKEAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASFRNATSGLCPVCRKAVSRQDLITAPTENRFQVDIEKNWVESCKVTALLNELKILCSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSTTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVSITRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01893 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 814 IPR013083 -
Phac5g01893 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 995 IPR027417 -
Phac5g01893 1001 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 1001 - -
Phac5g01893 1001 SMART HIRAN_2 98 205 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phac5g01893 1001 MobiDBLite consensus disorder prediction 52 75 - -
Phac5g01893 1001 Pfam SNF2-related domain 322 710 IPR000330 GO:0005524|GO:0140658
Phac5g01893 1001 CDD SF2_C_SNF 832 959 - -
Phac5g01893 1001 Gene3D - 434 633 IPR038718 -
Phac5g01893 1001 Gene3D - 375 422 IPR038718 -
Phac5g01893 1001 Pfam Zinc finger, C3HC4 type (RING finger) 763 810 - -
Phac5g01893 1001 ProSiteProfiles Zinc finger RING-type profile. 766 806 IPR001841 -
Phac5g01893 1001 SMART ring_2 766 805 IPR001841 -
Phac5g01893 1001 SMART helicmild6 865 948 IPR001650 -
Phac5g01893 1001 Gene3D - 648 764 IPR027417 -
Phac5g01893 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 632 IPR027417 -
Phac5g01893 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 377 594 IPR014001 -
Phac5g01893 1001 Pfam Helicase conserved C-terminal domain 837 948 IPR001650 -
Phac5g01893 1001 Pfam HIRAN domain 102 201 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phac5g01893 1001 MobiDBLite consensus disorder prediction 270 290 - -
Phac5g01893 1001 SUPERFAMILY RING/U-box 755 812 - -
Phac5g01893 1001 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 840 1001 IPR001650 -
Phac5g01893 1001 Gene3D - 815 999 IPR027417 -
Phac5g01893 1001 ProSitePatterns Zinc finger RING-type signature. 781 790 IPR017907 -
Phac5g01893 1001 CDD DEXDc_SHPRH-like 319 632 - -
Phac5g01893 1001 SMART ultradead3 315 616 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01893 Phac-Chr5 38894364 38903496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01893 1 1001 RAD5 or RAD16-like Gene Family AT5G22750 70.338 0.0 1461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac5g01893 SNF2_N 2e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01893 K15505 - gmx:100794452 1750.33