Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac5g01893 | ATGGGGAGCAAGGTCGGCGATCACCAGTTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATCAGAGCACTCCACATGGCTAAAAACGACGTCAATGCCGCCATCAACATCATCTTCGATACTCACACCGCCACAAGATTCAATCCCACGCCTCCCAACAATCAACGTGTTTCTCCTCTTAAACCCTCCCCTTCCACTCCTATGACGGCCAAGCCTAGCTTCTGTGAACAACACATCATCGATAATAATAATAACAGTGATGATTGGTGGTTTGTGAGTTGCGGGGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGACTCTAAACACCGGCGAGACGGTGACTTTCACGTTTCCGATCAAGAAGTTATCTTCCCCCTCTCCGGGGAGGGGGTTTGGACGGGCTGCGGCGTGTTCGGAGATAGTTCGTTTCTCCACTGAACAAGCTGGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGAGGGATCATAAGGTTAGGATTGAGGGGAAGTGCAAATCTGCTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTGAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACTGATGAATCAGTGTTTCATCCACTACCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTGAAAAAGGCAGAGTTAACTCCAGGTGATTTCTATTCCAACAAGCGTCCTCTCAGTGAAAGGGTAACATTACCACGTGCCAAGTTTGAGCACCCTTCCCAAAATGGCCATGAGAATGACAATGGGGATTCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGCGCAGAGTTAGAGGAAATGGAACCCCCTGCTACTCTTCAGTGCGATCTACGGCCTTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATGCATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCCTGGTTGACAAGAGGGAGCTTATTGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATTGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCGGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCACGAAAGGGTGAATCAGTAAGCAATCAACCCATAACCAAGTCCTGTACTGAAGGAGGTGAAGTTAGTGATACAGTGCATACTTTTTCAAACATACCCAAGAAGGCAACCAAATTTTCTGGTTTTGATAAACCAACGAAGCAAAGGAATTCTCTAACAAGCGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCAAAAAGATGCAAAAATTCTGGCTCAGAGTGATATTGTAATTACTACATATGGAATTTTGTCCTCTGAATTTTCAAGCGAGAATCCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAAGTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTCGAGGGTGGCGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGGCAATTATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGATAATTTACTGTGAACAGACAGAAGCTGAAAAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTCGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATACTTCAGATGGTGAAGTAAAAGAGGCACCTTCACTGGCGTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGATTATGCCGGGAATGCCTCTTGGCAAGTTTCCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAGCAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGGTGACTGCTCTTTTGAATGAACTAAAAATCCTTTGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCTTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTGCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACCACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGTCCATTACACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTACGAAGTGCACGAATTGAGGAGTTAAAGATGCTTTTTACTTAG | 3006 | 0.4468 | MGSKVGDHQLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIIFDTHTATRFNPTPPNNQRVSPLKPSPSTPMTAKPSFCEQHIIDNNNNSDDWWFVSCGEVTGLSTCKGRTLNTGETVTFTFPIKKLSSPSPGRGFGRAAACSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGKCKSAPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPLKKAELTPGDFYSNKRPLSERVTLPRAKFEHPSQNGHENDNGDSISEIEVENIVGVGSSAELEEMEPPATLQCDLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELIVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSRKGESVSNQPITKSCTEGGEVSDTVHTFSNIPKKATKFSGFDKPTKQRNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRQKDAKILAQSDIVITTYGILSSEFSSENPDDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALSADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKAIMLRRTKHSTDREGKPILVLPPADMQIIYCEQTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLSKLAKRFLRGTYNTSDGEVKEAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASFRNATSGLCPVCRKAVSRQDLITAPTENRFQVDIEKNWVESCKVTALLNELKILCSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSTTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVSITRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* | 1002 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac5g01893 | 1001 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 765 | 814 | IPR013083 | - | |
Phac5g01893 | 1001 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 644 | 995 | IPR027417 | - | |
Phac5g01893 | 1001 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 88 | 1001 | - | - | |
Phac5g01893 | 1001 | SMART | HIRAN_2 | 98 | 205 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Phac5g01893 | 1001 | MobiDBLite | consensus disorder prediction | 52 | 75 | - | - | |
Phac5g01893 | 1001 | Pfam | SNF2-related domain | 322 | 710 | IPR000330 | GO:0005524|GO:0140658 | |
Phac5g01893 | 1001 | CDD | SF2_C_SNF | 832 | 959 | - | - | |
Phac5g01893 | 1001 | Gene3D | - | 434 | 633 | IPR038718 | - | |
Phac5g01893 | 1001 | Gene3D | - | 375 | 422 | IPR038718 | - | |
Phac5g01893 | 1001 | Pfam | Zinc finger, C3HC4 type (RING finger) | 763 | 810 | - | - | |
Phac5g01893 | 1001 | ProSiteProfiles | Zinc finger RING-type profile. | 766 | 806 | IPR001841 | - | |
Phac5g01893 | 1001 | SMART | ring_2 | 766 | 805 | IPR001841 | - | |
Phac5g01893 | 1001 | SMART | helicmild6 | 865 | 948 | IPR001650 | - | |
Phac5g01893 | 1001 | Gene3D | - | 648 | 764 | IPR027417 | - | |
Phac5g01893 | 1001 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 306 | 632 | IPR027417 | - | |
Phac5g01893 | 1001 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 377 | 594 | IPR014001 | - | |
Phac5g01893 | 1001 | Pfam | Helicase conserved C-terminal domain | 837 | 948 | IPR001650 | - | |
Phac5g01893 | 1001 | Pfam | HIRAN domain | 102 | 201 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Phac5g01893 | 1001 | MobiDBLite | consensus disorder prediction | 270 | 290 | - | - | |
Phac5g01893 | 1001 | SUPERFAMILY | RING/U-box | 755 | 812 | - | - | |
Phac5g01893 | 1001 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 840 | 1001 | IPR001650 | - | |
Phac5g01893 | 1001 | Gene3D | - | 815 | 999 | IPR027417 | - | |
Phac5g01893 | 1001 | ProSitePatterns | Zinc finger RING-type signature. | 781 | 790 | IPR017907 | - | |
Phac5g01893 | 1001 | CDD | DEXDc_SHPRH-like | 319 | 632 | - | - | |
Phac5g01893 | 1001 | SMART | ultradead3 | 315 | 616 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac5g01893 | Phac-Chr5 | 38894364 | 38903496 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac5g01893 | 1 | 1001 | RAD5 or RAD16-like Gene Family | AT5G22750 | 70.338 | 0.0 | 1461 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Phac5g01893 | SNF2_N | 2e-84 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac5g01893 | K15505 | - | gmx:100794452 | 1750.33 |