Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01892 ATGGCCGAGAGAGATCATTCCAAAAACAAAAACCCAGTATTGGGTTCAGATGAAAGAGTGAAGAAGAGGGGTAGGCCTCTCAGGGGCAGAGGCCCAGGACGTCCTCCTCATGATACAGTTCCTAGTGTTGAGACTGGAACTAGCTTCGTCGCTCACCAGCTCAGGGTGAATGTTGGGGAGGACGTGGTAGACAAGGTTACAAAATTAGCTAAAATATCCTCTCAAACTGTTTGCGTACTTTCTGCTGTGGGTTCCATATCGAGCGTTGTCTTTAGGAAGCCCGGTCTTTCAAGTACTGATACTGTGAAGTGGGAGGGGCGCTTTGAAATTTTGTCACTATCTGGAAAATATACCTTCATCCCTGGTGAGGATGATGCGCATAGAGTACATAACTGGTGGAACCTTTCAATATGTGGCAGTAATGGAGTTGTTTTTGGAGGTTCCGTTGTTGGGCCAATCATTGCGGCTTCCCATGTTGATCTATTTCTTGCCAGTTTCAAGCTAAAGAGTATGGAAAAAATGAGAAGGCGCGCAGCTGAGTCTTCTGCTACTGCTGCTGCAGCAACAACAGCAGATTTCAGTCATAAGAAAACAGATACGGAAACTGTTTGCGACAAATATCCAATGGTTGATGGCAAACAGTCTCGAGATTCTCCAACATCTGGAGTTTCTCCAGCAGCTGGTATAGCATCAGAGAGTGTCACTCTTCAAGCAACTGGTCAAGCATCAAACAGTGTCACTCCTATAACAGCTGATAAAACTTCAGAGAGTTTCACTCCTAAAGCAGCTGATAAAACTTCAGAGAGTTTCACTCCTAAAACAGCTGATAAAACTTCAGGGAGTTTGACTCCTAAAACAACTGATAAATCTTCAGAGAGTTTCACTCTTAAAACAGCAGATAAAACTTCAGATAGTATCCCTTCTACCATGGGAGGGCACGCAGCTGGGTCTTCTTCTGTTGCAGATTATCCCATTCGTTGGAATATAGATTTAGAAAAGGTTCCCGATGAAGATCCAAATGAAGAAAGCGAAAAAGAGAGTGGCCGTTCACCATCATTTGGACTTTTAACAACTGATAAACCAATAAAGAAAGAAAGTTCTGAAACAACTGATAAACCACAGAAGGAACTCAGTTCTGAAACTGATGATAAACCACCCGAGAGTGTCACTCCTGCAACATCTGATAAACCACCTGAGAATGTTGCTCCTGCAACAACTGCAAAATCACCAGAGAATGTTGCTGTTTCAACATCTGATACATCATTACCTGTGATGGAGTGCTACTTCAATCAAGCGTCAGACGATATTCCTGTGAATCCGCATCTATAG 1329 0.4327 MAERDHSKNKNPVLGSDERVKKRGRPLRGRGPGRPPHDTVPSVETGTSFVAHQLRVNVGEDVVDKVTKLAKISSQTVCVLSAVGSISSVVFRKPGLSSTDTVKWEGRFEILSLSGKYTFIPGEDDAHRVHNWWNLSICGSNGVVFGGSVVGPIIAASHVDLFLASFKLKSMEKMRRRAAESSATAAAATTADFSHKKTDTETVCDKYPMVDGKQSRDSPTSGVSPAAGIASESVTLQATGQASNSVTPITADKTSESFTPKAADKTSESFTPKTADKTSGSLTPKTTDKSSESFTLKTADKTSDSIPSTMGGHAAGSSSVADYPIRWNIDLEKVPDEDPNEESEKESGRSPSFGLLTTDKPIKKESSETTDKPQKELSSETDDKPPESVTPATSDKPPENVAPATTAKSPENVAVSTSDTSLPVMECYFNQASDDIPVNPHL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01892 442 MobiDBLite consensus disorder prediction 405 420 - -
Phac5g01892 442 Gene3D - 51 186 - -
Phac5g01892 442 MobiDBLite consensus disorder prediction 361 383 - -
Phac5g01892 442 MobiDBLite consensus disorder prediction 238 420 - -
Phac5g01892 442 MobiDBLite consensus disorder prediction 1 24 - -
Phac5g01892 442 Pfam Plants and Prokaryotes Conserved (PCC) domain 52 167 IPR005175 -
Phac5g01892 442 MobiDBLite consensus disorder prediction 329 348 - -
Phac5g01892 442 SUPERFAMILY AF0104/ALDC/Ptd012-like 49 169 - -
Phac5g01892 442 CDD DUF296 52 127 IPR005175 -
Phac5g01892 442 MobiDBLite consensus disorder prediction 1 43 - -
Phac5g01892 442 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 230 IPR039605 GO:0003680
Phac5g01892 442 MobiDBLite consensus disorder prediction 238 315 - -
Phac5g01892 442 MobiDBLite consensus disorder prediction 207 226 - -
Phac5g01892 442 ProSiteProfiles PPC domain profile profile. 46 188 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01892 Phac-Chr5 38890125 38892650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01892 42 166 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 42.063 6.49e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01892 - - pvu:PHAVU_005G127900g 682.559