Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01888 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTCTTAAGGTAGACCCAACTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAGGATAAACCAAATGAGCCTGTGGTTGTGTACTTGAAGGTTGGTGAGCAGAAATTTGTCTTGGGAACCCTCTCCAGGGAGAAAATCCCTCAAATTTCTCTGGAATTGGTTCTGGAGAAGGAGTTTGAATTATCTCACAGTTCAAAGAATGCCAGCGTTCATTTCTGTGGATACAAGGCTTATTACTCTGGCGATGATAGTGAGGAGGATGAATTTACTGATAGCGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACCTGAAAAAAAAGCTGAGGAAGTGAAGGCAGTTGGCTCTAAAAAGCCAGATGCCAAAGCTGCTGCTCCAGCAAAGAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAAGGAGGACTCTGATGATGATTCTGATGAAGATGAAGCTTTTGGAATTTCTGATGAAGAGATGGATGATGCTGACAGTGACGACAGCGATGAGGAGTCTGACAGTGATGAAGATGATGATGAAGAAACCCCTCCTAAAAAGGCGGATATAGGAAAGAAGAGAGCAAATGAGTCTGCATCAAAAACTCCTGTTTCCTCCAAGAAAGCAAAAAATGCTACTCCAGAAAAGACTGATGGTAAGAAAATAGGAAATGCAGGAACTCCACACTCCGCCAAAAAAGGTGGAAAGACTCCCAACAGTGAAGGCAAGAGTCCCAAGTCCGGTGGACTTAGTTGCAAAAGCTGTAGCAAGACTTTCAACTCCGATAGTGGTCTGCAACAACATAACAAGGCAAAGCACGGTGGCCAGTGA 888 0.4426 MEFWGAEVKVGESLKVDPTEFEACIHLSQAALGEAKKDKPNEPVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKNASVHFCGYKAYYSGDDSEEDEFTDSDEDIPLVNTENGKPEKKAEEVKAVGSKKPDAKAAAPAKKVKVVEPEKDKEDSDDDSDEDEAFGISDEEMDDADSDDSDEESDSDEDDDEETPPKKADIGKKRANESASKTPVSSKKAKNATPEKTDGKKIGNAGTPHSAKKGGKTPNSEGKSPKSGGLSCKSCSKTFNSDSGLQQHNKAKHGGQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01888 295 Gene3D Nucleoplasmin core domain 1 100 - -
Phac5g01888 295 MobiDBLite consensus disorder prediction 102 295 - -
Phac5g01888 295 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Phac5g01888 295 MobiDBLite consensus disorder prediction 160 202 - -
Phac5g01888 295 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
Phac5g01888 295 FunFam Histone deacetylase HDT1 1 100 - -
Phac5g01888 295 MobiDBLite consensus disorder prediction 117 159 - -
Phac5g01888 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 295 IPR013087 -
Phac5g01888 295 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01888 Phac-Chr5 38862888 38866401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01888 1 292 C2H2 Transcription Factor Family AT5G03740 38.318 4.78e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g01888 NPL 3.2e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01888 - - gmx:100795506 371.318