Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01759 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACTGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGCTCAAAGCTAAAAATTGCACGTGCCCAATCACACAGCAACCATTGCCGCGAAACTCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCAAACGGTGTTGATCAAATTCCGACACCGAAGTCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCCACGCTTTCAAAACGCGATCGAGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGTGTAGCAGAAGCTATGGTGCAGGTCATCACAAAGAGTTTCACGCAGGAAAAAACGACGTCGTGCATTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGATGGACAATAACTACATGAAGCGCTTGCTGGGTCAGAACTTTGACTTTCTGAACTCGTTGACTCGGGTTTTGCAGCTTCAAAATAAGAACAACGTTAAGGTGATAAATGAAGCAATGCCTATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTAGGGCTTGAATTCTTCAGAGTGGTTGTGAAGGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCGGCATTGTATGTGCTCATAGAAACGTGTCCTTTGGGGAGGAATAGAACGAAGATAGTTGATGCAGGTGCCGTGGAGGAGCTTGTTGAACTTGCACTTGAAAACCCAGAAAAGAATCTAACAGAACTCGTATTCATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCCAAAAGGATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTCTCAGCGTCTCATGAAGTAGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAAGTGTACTTAGGTTACACTCCAAAACATGGAATAATTCTCCCTGTATTCAAAGGGAGTTGATTGATTGGGCGGTTGATGAGCAGCCGGCAAGTATGACAAAAATGGTGGCTAAAGATTAA 1281 0.4465 MTEIEIPQFFACPISLQIMKDPVTTVTGITYDRESIEYWLLKAKNCTCPITQQPLPRNSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVPPRFQNAIEKLHNLAVENERNRRCMASAGVAEAMVQVITKSFTQEKTTSCIEEALRILRLLWSSANVMDNNYMKRLLGQNFDFLNSLTRVLQLQNKNNVKVINEAMPILKLTIEAKDSTPLGNLGLEFFRVVVKVMKNRELSQQAIKSALYVLIETCPLGRNRTKIVDAGAVEELVELALENPEKNLTELVFILLAHLCSCADGRDQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLISKFSASHEVVQEMLRVGAVSKLCMVLQADCASYLKEKARSVLRLHSKTWNNSPCIQRELIDWAVDEQPASMTKMVAKD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01759 426 Gene3D - 101 408 IPR011989 -
Phac5g01759 426 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Phac5g01759 426 SUPERFAMILY ARM repeat 113 397 IPR016024 -
Phac5g01759 426 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Phac5g01759 426 CDD RING-Ubox_PUB 7 55 IPR045210 -
Phac5g01759 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Phac5g01759 426 SUPERFAMILY RING/U-box 3 84 - -
Phac5g01759 426 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Phac5g01759 426 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01759 Phac-Chr5 37728656 37730593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01759 3 408 U-box Gene Family AT2G35930 40.976 9.16e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01759 - - gmx:100778547 691.034